Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 LAMTOR5-AS1-203ENST00000585330 463 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 AC010320.2-202ENST00000599125 595 ntTSL 4 BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 MTND3P19-201ENST00000603825 345 ntBASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 LSM1P2-201ENST00000604911 322 ntBASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 AC018926.3-201ENST00000618841 406 ntBASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 AL445670.1-201ENST00000618889 801 ntBASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 AP003485.2-201ENST00000623636 610 ntBASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 AC087565.3-203ENST00000641018 837 ntBASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 CHD8-202ENST00000430710 7420 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 DMD-205ENST00000359836 7339 ntTSL 5 BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 LINC00824-203ENST00000520206 2055 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 AC011933.2-201ENST00000578539 2790 ntBASIC6.69□□□□□ -1.34
CCDC144BQ3MJ40 GPAM-202ENST00000369425 5664 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 LRRC77P-206ENST00000481578 2350 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC083837.1-201ENST00000565297 2994 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 FAM72B-201ENST00000355228 1773 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 FCER1G-201ENST00000289902 591 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 OR1L1-201ENST00000309623 933 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 OR9K1P-201ENST00000326513 941 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 RN7SKP162-201ENST00000363605 345 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 OR1L1-202ENST00000373686 1083 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 RN7SKP29-201ENST00000410957 272 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ELOCP9-201ENST00000418624 239 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AL355433.1-201ENST00000422804 300 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 USP9YP11-201ENST00000427537 717 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 TAF1A-AS1-202ENST00000427540 750 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 MTCO1P3-201ENST00000429327 192 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 BX276092.6-201ENST00000430476 250 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AL590502.1-201ENST00000433019 505 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 HMGB3P24-201ENST00000433260 622 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 RPL7P34-201ENST00000433316 712 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC018865.1-201ENST00000433507 578 ntTSL 4 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 LINC00376-201ENST00000439454 693 ntTSL 5 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AL163193.1-201ENST00000444895 788 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC044781.1-201ENST00000446193 570 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 EIF4A1P6-201ENST00000448133 1210 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ARL13A-202ENST00000450049 1102 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC019117.1-204ENST00000451792 442 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 BX276092.8-201ENST00000455722 250 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 RPL37P3-201ENST00000456825 293 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 RPS23P6-201ENST00000466136 431 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC005912.1-201ENST00000495392 255 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC113347.4-201ENST00000506032 685 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 SNORA43.3-201ENST00000517240 103 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC012103.1-201ENST00000522281 780 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 PKIA-AS1-203ENST00000522807 692 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AP001317.1-201ENST00000531194 960 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AP000857.2-201ENST00000532123 419 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC027026.1-201ENST00000532323 742 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC126615.2-201ENST00000553003 515 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC100821.2-201ENST00000565668 440 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 MIR1273E-201ENST00000581165 102 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC060780.2-201ENST00000589047 198 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC079395.2-201ENST00000610982 737 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC091304.6-201ENST00000619761 202 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ADAM24P-201ENST00000398655 2101 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 AC009313.2-201ENST00000417893 1941 ntBASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
CCDC144BQ3MJ40 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 ZCCHC6-201ENST00000277141 5724 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 ZNF93-201ENST00000343769 2648 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 CNTNAP4-205ENST00000476707 4355 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AC114774.1-201ENST00000507410 1770 ntBASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AC067956.1-201ENST00000414512 2062 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 BX005019.1-201ENST00000561881 1810 ntBASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 RNASEL-202ENST00000539397 4046 ntTSL 2 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 ZNF418-212ENST00000616958 2212 ntAPPRIS P3 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 GUCA1C-201ENST00000261047 982 ntAPPRIS P1 TSL 1 (best) BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 snoZ40.1-201ENST00000364540 72 ntBASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AL590084.1-201ENST00000407885 387 ntBASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AL354733.1-204ENST00000412069 424 ntTSL 5 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AL162727.2-201ENST00000428429 395 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 CA1-201ENST00000431316 1232 ntAPPRIS P1 TSL 5 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AL391704.1-202ENST00000453889 874 ntTSL 3 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC6.67□□□□□ -1.34
CCDC144BQ3MJ40 AC091212.1-201ENST00000474798 395 ntTSL 5 BASIC6.67□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms