Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AL136099.1-201ENST00000436492 557 ntTSL 3 BASIC5.61□□□□□ -1.51
NUP98P52948 AC104241.1-201ENST00000530039 628 ntTSL 3 BASIC5.61□□□□□ -1.51
NUP98P52948 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.61□□□□□ -1.51
NUP98P52948 RPL7P50-201ENST00000600588 727 ntBASIC5.61□□□□□ -1.51
NUP98P52948 AC005899.7-201ENST00000618199 588 ntBASIC5.61□□□□□ -1.51
NUP98P52948 uc_338.13-201ENST00000618243 179 ntBASIC5.61□□□□□ -1.51
NUP98P52948 RNA5SP196-201ENST00000625967 102 ntBASIC5.61□□□□□ -1.51
NUP98P52948 PPP1R9A-201ENST00000289495 3983 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NUP98P52948 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.61□□□□□ -1.51
NUP98P52948 CACNB4-221ENST00000636130 7748 ntTSL 5 BASIC5.61□□□□□ -1.51
NUP98P52948 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.61□□□□□ -1.51
NUP98P52948 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.61□□□□□ -1.51
NUP98P52948 RBM28-201ENST00000223073 15507 ntAPPRIS P1 TSL 1 (best) BASIC5.61□□□□□ -1.51
NUP98P52948 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.61□□□□□ -1.51
NUP98P52948 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC5.6□□□□□ -1.51
NUP98P52948 RN7SKP227-201ENST00000364445 330 ntBASIC5.6□□□□□ -1.51
NUP98P52948 AF240627.1-201ENST00000416002 879 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP98P52948 AL360227.1-201ENST00000425364 433 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP98P52948 AL355613.1-201ENST00000451856 480 ntTSL 2 BASIC5.6□□□□□ -1.51
NUP98P52948 RPS27AP17-201ENST00000463344 455 ntBASIC5.6□□□□□ -1.51
NUP98P52948 UQCRHP4-201ENST00000471686 272 ntBASIC5.6□□□□□ -1.51
NUP98P52948 TATDN1-202ENST00000517678 815 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP98P52948 TATDN1-206ENST00000519548 889 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 AC105233.3-201ENST00000531125 744 ntBASIC5.6□□□□□ -1.51
NUP98P52948 AC087477.6-201ENST00000559595 843 ntBASIC5.6□□□□□ -1.51
NUP98P52948 AC011477.5-201ENST00000586571 259 ntBASIC5.6□□□□□ -1.51
NUP98P52948 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP98P52948 SLX4IP-201ENST00000334534 6062 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 EIF3H-209ENST00000521861 3959 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP98P52948 RPGRIP1L-212ENST00000621565 6038 ntAPPRIS ALT1 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 PUS7L-203ENST00000431332 1873 ntTSL 2 BASIC5.6□□□□□ -1.51
NUP98P52948 FRMD6-205ENST00000554167 4176 ntTSL 2 BASIC5.6□□□□□ -1.51
NUP98P52948 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC5.6□□□□□ -1.51
NUP98P52948 MIR133A2-201ENST00000347538 102 ntBASIC5.6□□□□□ -1.51
NUP98P52948 RNU1-94P-201ENST00000362627 173 ntBASIC5.6□□□□□ -1.51
NUP98P52948 EIF4A1P3-201ENST00000411521 244 ntBASIC5.6□□□□□ -1.51
NUP98P52948 AP000844.1-201ENST00000446631 577 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP98P52948 AC087360.1-201ENST00000518788 616 ntBASIC5.6□□□□□ -1.51
NUP98P52948 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5.6□□□□□ -1.51
NUP98P52948 LINC02390-201ENST00000541404 560 ntTSL 4 BASIC5.6□□□□□ -1.51
NUP98P52948 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 STIL-204ENST00000396221 4558 ntAPPRIS ALT2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 AL136164.3-201ENST00000624429 3978 ntBASIC5.6□□□□□ -1.51
NUP98P52948 CEP290-207ENST00000552810 7948 ntAPPRIS P2 TSL 1 (best) BASIC5.6□□□□□ -1.51
NUP98P52948 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NUP98P52948 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.59□□□□□ -1.51
NUP98P52948 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NUP98P52948 LINC01676-202ENST00000435253 1849 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NUP98P52948 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NUP98P52948 ANO4-202ENST00000392979 3909 ntAPPRIS P3 TSL 2 BASIC5.59□□□□□ -1.51
NUP98P52948 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC5.59□□□□□ -1.51
NUP98P52948 AL157756.1-201ENST00000532515 2859 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NUP98P52948 RNA5SP151-201ENST00000365632 117 ntBASIC5.59□□□□□ -1.51
NUP98P52948 MYCBP2-AS1-201ENST00000422231 519 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP98P52948 AL157831.1-201ENST00000426134 473 ntBASIC5.59□□□□□ -1.51
NUP98P52948 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
NUP98P52948 TBX18-AS1-202ENST00000441863 382 ntTSL 2 BASIC5.59□□□□□ -1.51
NUP98P52948 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC5.59□□□□□ -1.51
NUP98P52948 ZBED3-AS1-209ENST00000512213 681 ntTSL 3 BASIC5.59□□□□□ -1.51
NUP98P52948 ARL6IP1P1-201ENST00000545836 610 ntBASIC5.59□□□□□ -1.51
NUP98P52948 LINC02290-201ENST00000554187 608 ntTSL 4 BASIC5.59□□□□□ -1.51
NUP98P52948 AC010547.7-201ENST00000570323 333 ntBASIC5.59□□□□□ -1.51
NUP98P52948 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.59□□□□□ -1.51
NUP98P52948 ADAD1P2-201ENST00000588476 646 ntBASIC5.59□□□□□ -1.51
NUP98P52948 AC006116.5-201ENST00000591936 559 ntBASIC5.59□□□□□ -1.51
NUP98P52948 LINC01808-202ENST00000641680 1116 ntBASIC5.59□□□□□ -1.51
NUP98P52948 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
NUP98P52948 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC5.59□□□□□ -1.51
NUP98P52948 SPAG6-209ENST00000538630 2376 ntTSL 5 BASIC5.59□□□□□ -1.51
NUP98P52948 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
NUP98P52948 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
NUP98P52948 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.52
NUP98P52948 SRY-201ENST00000383070 845 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
NUP98P52948 RNA5SP187-201ENST00000384400 119 ntBASIC5.58□□□□□ -1.52
NUP98P52948 RPS26P8-201ENST00000393490 348 ntBASIC5.58□□□□□ -1.52
NUP98P52948 RN7SKP33-201ENST00000410942 340 ntBASIC5.58□□□□□ -1.52
NUP98P52948 RPEP2-201ENST00000432149 701 ntBASIC5.58□□□□□ -1.52
NUP98P52948 AL132765.1-201ENST00000434165 553 ntBASIC5.58□□□□□ -1.52
NUP98P52948 CDC27P1-201ENST00000445384 715 ntBASIC5.58□□□□□ -1.52
NUP98P52948 AL356421.2-201ENST00000446733 197 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP98P52948 AC012671.1-201ENST00000451912 203 ntBASIC5.58□□□□□ -1.52
NUP98P52948 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NUP98P52948 RNA5SP446-201ENST00000515955 82 ntBASIC5.58□□□□□ -1.52
NUP98P52948 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
NUP98P52948 IGKV3OR22-2-201ENST00000517943 313 ntBASIC5.58□□□□□ -1.52
NUP98P52948 AC010476.1-201ENST00000519111 851 ntBASIC5.58□□□□□ -1.52
NUP98P52948 RN7SL703P-201ENST00000578485 302 ntBASIC5.58□□□□□ -1.52
NUP98P52948 AL020997.2-201ENST00000602607 184 ntBASIC5.58□□□□□ -1.52
NUP98P52948 MIR6867-201ENST00000610636 67 ntBASIC5.58□□□□□ -1.52
NUP98P52948 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
NUP98P52948 TEX41-256ENST00000626411 368 ntTSL 5 BASIC5.58□□□□□ -1.52
NUP98P52948 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.58□□□□□ -1.52
NUP98P52948 AL139254.3-201ENST00000641097 674 ntBASIC5.58□□□□□ -1.52
NUP98P52948 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.58□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 132.6 ms