Protein–RNA interactions for Protein: P31277

HOXD11, Homeobox protein Hox-D11, humanhuman

Predicted RBP Predictions only

Length 338 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD11P31277 COL6A3-205ENST00000392004 4037 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 AP002833.3-201ENST00000625075 2265 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 MCM3-207ENST00000616552 3208 ntTSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 ERN1-201ENST00000433197 7876 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 EEA1-201ENST00000322349 9875 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 ZNF304-202ENST00000391705 4313 ntAPPRIS P3 TSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 TPK1-201ENST00000360057 2439 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 TMEM52B-203ENST00000381923 2601 ntAPPRIS ALT2 TSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 AJUBA-203ENST00000397388 2648 ntTSL 2 BASIC9.45□□□□□ -0.9
HOXD11P31277 PPP2R5D-203ENST00000461010 1558 ntAPPRIS ALT1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 NWD1-201ENST00000379808 7254 ntTSL 5 BASIC9.45□□□□□ -0.9
HOXD11P31277 RANGAP1-207ENST00000455915 4222 ntAPPRIS P1 TSL 1 (best) BASIC9.45□□□□□ -0.9
HOXD11P31277 NCAPD2P1-201ENST00000432906 1801 ntBASIC9.45□□□□□ -0.9
HOXD11P31277 CDKAL1-202ENST00000378610 3115 ntAPPRIS P1 TSL 2 BASIC9.45□□□□□ -0.9
HOXD11P31277 PCBP1-AS1-243ENST00000458698 1893 ntTSL 3 BASIC9.45□□□□□ -0.9
HOXD11P31277 OARD1-210ENST00000479950 3330 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC9.44□□□□□ -0.9
HOXD11P31277 PDXDC1-216ENST00000569715 3775 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 PIEZO2-210ENST00000580640 8334 ntAPPRIS ALT2 TSL 5 BASIC9.44□□□□□ -0.9
HOXD11P31277 TACC2-202ENST00000334433 9377 ntTSL 5 BASIC9.44□□□□□ -0.9
HOXD11P31277 GNAS-204ENST00000313949 2578 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 DYNC1I2-205ENST00000409453 2552 ntTSL 5 BASIC9.44□□□□□ -0.9
HOXD11P31277 DNALI1-201ENST00000296218 2649 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 ZNF33A-208ENST00000628825 2854 ntAPPRIS ALT2 TSL 2 BASIC9.44□□□□□ -0.9
HOXD11P31277 EXOC5-211ENST00000621441 10589 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 OR51E1-202ENST00000530215 2942 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 LHX9-203ENST00000367390 7413 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 LINC00547-201ENST00000612438 3314 ntTSL 2 BASIC9.44□□□□□ -0.9
HOXD11P31277 RNU4-9P-201ENST00000364951 139 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 RNU6-36P-201ENST00000384172 107 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 RNU6-16P-201ENST00000384385 107 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 RNU6-15P-201ENST00000384534 107 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 RNU6-381P-201ENST00000391259 108 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 SOD1P1-201ENST00000407803 440 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AC245452.3-201ENST00000413294 162 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AC063979.1-201ENST00000415539 377 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC9.44□□□□□ -0.9
HOXD11P31277 LINC01006-203ENST00000425712 661 ntTSL 2 BASIC9.44□□□□□ -0.9
HOXD11P31277 RPS15AP5-201ENST00000436276 388 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AC127537.2-201ENST00000439258 465 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AC239367.1-201ENST00000439389 936 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AL049733.1-201ENST00000440178 603 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 RNU7-92P-201ENST00000458830 76 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 RNU7-173P-201ENST00000458903 76 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 LRRC77P-202ENST00000463642 457 ntTSL 4 BASIC9.44□□□□□ -0.9
HOXD11P31277 RN7SL865P-201ENST00000466711 289 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AC053481.1-201ENST00000467217 306 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 RPL23AP2-201ENST00000471227 466 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 GAPDHP44-201ENST00000513513 1007 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC9.44□□□□□ -0.9
HOXD11P31277 FAM222B-214ENST00000583953 564 ntTSL 4 BASIC9.44□□□□□ -0.9
HOXD11P31277 TNS1-209ENST00000446688 4292 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 SCN5A-210ENST00000455624 7170 ntTSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 ZSCAN5C-201ENST00000376267 1491 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
HOXD11P31277 CECR2-204ENST00000400585 4833 ntAPPRIS P2 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 FOXP1-209ENST00000475937 4967 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 MIR4697HG-201ENST00000624667 5164 ntBASIC9.44□□□□□ -0.9
HOXD11P31277 PUM1-201ENST00000257075 5360 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 MARF1-205ENST00000548025 5891 ntAPPRIS ALT1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 ZSCAN26-207ENST00000623276 1998 ntAPPRIS P2 TSL 3 BASIC9.44□□□□□ -0.9
HOXD11P31277 ZFP2-202ENST00000520301 2043 ntAPPRIS P1 TSL 5 BASIC9.44□□□□□ -0.9
HOXD11P31277 ZNF573-208ENST00000536220 2257 ntAPPRIS P1 TSL 3 BASIC9.44□□□□□ -0.9
HOXD11P31277 SNX10-209ENST00000619420 2361 ntAPPRIS ALT1 TSL 5 BASIC9.44□□□□□ -0.9
HOXD11P31277 CHODL-204ENST00000400128 2421 ntTSL 2 BASIC9.44□□□□□ -0.9
HOXD11P31277 INTS9-213ENST00000521777 2430 ntTSL 2 BASIC9.44□□□□□ -0.9
HOXD11P31277 ITIH4-201ENST00000266041 3336 ntAPPRIS P3 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 SEPT2-201ENST00000360051 3613 ntAPPRIS P1 TSL 1 (best) BASIC9.44□□□□□ -0.9
HOXD11P31277 MICAL3-204ENST00000414725 4756 ntTSL 5 BASIC9.44□□□□□ -0.9
HOXD11P31277 UNC119-205ENST00000484980 4189 ntTSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 PASD1-201ENST00000370357 3163 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 AL133384.2-201ENST00000623755 2954 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AP000977.1-201ENST00000501964 2908 ntTSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 NLRP9P1-201ENST00000540920 2655 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC9.43□□□□□ -0.9
HOXD11P31277 CUL1P1-201ENST00000509510 2425 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 PDE4D-207ENST00000405755 2294 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 LTA4H-201ENST00000228740 2139 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 MORF4L2-206ENST00000433176 1965 ntAPPRIS P1 TSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 GIGYF2-202ENST00000409196 5747 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 NF2-206ENST00000361676 1716 ntTSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 MAGEB16-201ENST00000399985 1667 ntAPPRIS P2 TSL 5 BASIC9.43□□□□□ -0.9
HOXD11P31277 TCERG1-201ENST00000296702 4654 ntAPPRIS P3 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 HS6ST3-202ENST00000620595 7073 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 CDHR2-201ENST00000261944 4068 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.9
HOXD11P31277 PSEN1-205ENST00000406768 4062 ntTSL 2 BASIC9.43□□□□□ -0.9
HOXD11P31277 RNU4-80P-201ENST00000363200 141 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 RN7SKP259-201ENST00000411066 333 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AC006461.1-201ENST00000412637 326 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AC019197.1-207ENST00000431341 635 ntTSL 3 BASIC9.43□□□□□ -0.9
HOXD11P31277 AL136369.1-201ENST00000437825 244 ntTSL 5 BASIC9.43□□□□□ -0.9
HOXD11P31277 AL353748.1-201ENST00000440753 474 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AC013399.1-201ENST00000450311 418 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AC080188.1-201ENST00000491923 567 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 OR4N2-203ENST00000557677 1008 ntAPPRIS P1 BASIC9.43□□□□□ -0.9
HOXD11P31277 AC138749.2-201ENST00000566048 167 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 OR1F2P-201ENST00000570470 933 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 RPL10P15-201ENST00000585756 315 ntBASIC9.43□□□□□ -0.9
HOXD11P31277 AC074029.3-201ENST00000618623 312 ntBASIC9.43□□□□□ -0.9
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms