Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC9P31274 AL157378.1-201ENST00000424506 265 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC9P31274 GAS5-208ENST00000425771 242 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC9P31274 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC9P31274 LINC02527-201ENST00000449069 762 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC9P31274 EIF4A2P4-201ENST00000458691 1196 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 AC015795.1-201ENST00000513669 327 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 AC083923.2-202ENST00000517773 498 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC9P31274 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC9P31274 AC025035.1-201ENST00000551571 894 ntTSL 2 BASIC6.17□□□□□ -1.42
HOXC9P31274 AC093524.1-201ENST00000564266 1094 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 AC006504.2-201ENST00000589471 458 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC9P31274 AL353811.1-202ENST00000602614 618 ntTSL 3 BASIC6.17□□□□□ -1.42
HOXC9P31274 AC016911.1-201ENST00000613297 452 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 AC114781.5-201ENST00000615297 108 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 FAM49B-230ENST00000639004 837 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC9P31274 MAPK10-206ENST00000395161 4186 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC9P31274 PATJ-213ENST00000613764 4172 ntTSL 5 BASIC6.17□□□□□ -1.42
HOXC9P31274 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC9P31274 AC108467.2-201ENST00000617640 1597 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC9P31274 MTCO1P22-201ENST00000604619 1360 ntBASIC6.17□□□□□ -1.42
HOXC9P31274 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.17□□□□□ -1.42
HOXC9P31274 C3orf67-AS1-202ENST00000482372 2203 ntTSL 2 BASIC6.17□□□□□ -1.42
HOXC9P31274 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC9P31274 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.17□□□□□ -1.42
HOXC9P31274 VN2R3P-201ENST00000422626 1412 ntBASIC6.16□□□□□ -1.42
HOXC9P31274 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 VWC2L-202ENST00000427124 4480 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 MYNN-203ENST00000544106 4815 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 ST7-212ENST00000422922 1887 ntTSL 5 BASIC6.16□□□□□ -1.42
HOXC9P31274 MGP-201ENST00000228938 694 ntTSL 3 BASIC6.16□□□□□ -1.42
HOXC9P31274 Z98745.1-201ENST00000402553 494 ntBASIC6.16□□□□□ -1.42
HOXC9P31274 MIR1193-201ENST00000408109 78 ntBASIC6.16□□□□□ -1.42
HOXC9P31274 AL049812.3-201ENST00000412348 417 ntTSL 3 BASIC6.16□□□□□ -1.42
HOXC9P31274 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.16□□□□□ -1.42
HOXC9P31274 E2F6P2-201ENST00000420708 748 ntBASIC6.16□□□□□ -1.42
HOXC9P31274 RPS27AP16-201ENST00000492222 470 ntBASIC6.16□□□□□ -1.42
HOXC9P31274 AL109766.1-201ENST00000555080 552 ntBASIC6.16□□□□□ -1.42
HOXC9P31274 AC105094.2-202ENST00000590968 566 ntTSL 2 BASIC6.16□□□□□ -1.42
HOXC9P31274 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 AP000641.1-201ENST00000531988 1639 ntBASIC6.16□□□□□ -1.42
HOXC9P31274 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 AF127577.4-201ENST00000432230 5929 ntTSL 5 BASIC6.16□□□□□ -1.42
HOXC9P31274 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
HOXC9P31274 ZNF765-201ENST00000396408 4569 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
HOXC9P31274 HEPHL1-201ENST00000315765 5345 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
HOXC9P31274 OR8H2-203ENST00000641311 3092 ntAPPRIS P2 BASIC6.15□□□□□ -1.42
HOXC9P31274 FOXP1-IT1-201ENST00000498714 3539 ntTSL 2 BASIC6.15□□□□□ -1.42
HOXC9P31274 AC140134.1-201ENST00000511830 3544 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AC091046.3-201ENST00000631455 1574 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
HOXC9P31274 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
HOXC9P31274 SNTN-201ENST00000343837 1090 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.42
HOXC9P31274 RN7SKP227-201ENST00000364445 330 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 RNU6-316P-201ENST00000391027 107 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AP000580.1-201ENST00000404439 358 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HOXC9P31274 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC6.15□□□□□ -1.42
HOXC9P31274 AL391704.2-201ENST00000418379 981 ntTSL 1 (best) BASIC6.15□□□□□ -1.42
HOXC9P31274 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC6.15□□□□□ -1.42
HOXC9P31274 AP001324.1-201ENST00000428553 399 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 RPS29P17-201ENST00000430795 166 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AL121974.1-201ENST00000437859 377 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXC9P31274 RPL23AP93-201ENST00000440847 484 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 RPL7AP28-201ENST00000464513 571 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AGGF1P3-201ENST00000493675 1213 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AC135457.1-201ENST00000503553 664 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXC9P31274 AC106806.2-201ENST00000509365 500 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AC010476.1-201ENST00000519111 851 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 MS4A7-208ENST00000530234 730 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXC9P31274 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC6.15□□□□□ -1.42
HOXC9P31274 AL133304.2-201ENST00000546376 886 ntTSL 2 BASIC6.15□□□□□ -1.42
HOXC9P31274 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.15□□□□□ -1.42
HOXC9P31274 AC090844.2-203ENST00000582263 632 ntTSL 5 BASIC6.15□□□□□ -1.42
HOXC9P31274 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC6.15□□□□□ -1.42
HOXC9P31274 AL021368.1-201ENST00000607490 540 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AC005899.7-201ENST00000618199 588 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 AC011815.3-201ENST00000624194 473 ntBASIC6.15□□□□□ -1.42
HOXC9P31274 MYOCOS-203ENST00000637303 564 ntAPPRIS P5 TSL 5 BASIC6.15□□□□□ -1.42
HOXC9P31274 CAPRIN2-203ENST00000417045 3535 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
HOXC9P31274 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC6.15□□□□□ -1.43
HOXC9P31274 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.43
HOXC9P31274 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.43
HOXC9P31274 MAPK10-304ENST00000641341 3984 ntBASIC6.15□□□□□ -1.43
HOXC9P31274 AC109446.4-201ENST00000623235 2755 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 GAPVD1-206ENST00000394104 6737 ntTSL 2 BASIC6.14□□□□□ -1.43
HOXC9P31274 ZC3H14-215ENST00000555900 1762 ntTSL 5 BASIC6.14□□□□□ -1.43
HOXC9P31274 RNMT-201ENST00000262173 6051 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
HOXC9P31274 FGF1-202ENST00000359370 3660 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC9P31274 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
HOXC9P31274 AC008549.2-201ENST00000333482 706 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 AC083799.1-201ENST00000366451 910 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 C9orf153-202ENST00000376001 409 ntAPPRIS ALT2 TSL 3 BASIC6.14□□□□□ -1.43
HOXC9P31274 AC007738.1-201ENST00000413892 348 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 TMBIM7P-201ENST00000418074 855 ntBASIC6.14□□□□□ -1.43
HOXC9P31274 LINC00626-201ENST00000420691 955 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 92.8 ms