Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 IL21-AS1-201ENST00000417927 3748 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 KIF27-204ENST00000413982 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 CFHR1-201ENST00000320493 1271 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RNU105B-201ENST00000364478 208 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RNU6-619P-201ENST00000365146 108 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 PTPN20-208ENST00000395727 790 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC245096.1-201ENST00000413104 546 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 TPT1P2-201ENST00000413105 503 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RPS15AP38-201ENST00000413110 372 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AL096829.1-201ENST00000413677 457 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RPS15AP30-201ENST00000420976 390 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RPL7P44-201ENST00000424827 742 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AKR1B10P1-201ENST00000425765 942 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC007559.1-201ENST00000428736 355 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC008063.2-201ENST00000432251 619 ntTSL 2 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LINC01078-201ENST00000434832 387 ntTSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC110602.1-201ENST00000437414 318 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC079922.1-201ENST00000443291 359 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 YWHAQP9-201ENST00000445891 512 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 FTLP8-201ENST00000446770 267 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LINC01952-202ENST00000450016 281 ntTSL 3 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 PPIAP27-201ENST00000453800 265 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 MTCO3P11-201ENST00000455103 774 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 MDM2-217ENST00000478070 692 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LSM3P4-201ENST00000502948 309 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC114956.1-201ENST00000504277 512 ntTSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC097480.1-201ENST00000509416 712 ntTSL 3 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AP003033.1-201ENST00000527244 415 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AKIRIN1P1-201ENST00000547384 544 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 HNRNPCP1-201ENST00000556181 766 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LINC01579-205ENST00000556447 791 ntTSL 4 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC026474.1-201ENST00000562422 428 ntTSL 2 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC090415.2-201ENST00000584078 374 ntTSL 3 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LINC01198-204ENST00000594153 552 ntTSL 3 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 VN1R90P-201ENST00000595717 726 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 NTAN1P1-201ENST00000603150 646 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC073114.1-201ENST00000612027 490 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RN7SL261P-201ENST00000613441 282 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC096861.1-201ENST00000616652 240 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AL607023.1-201ENST00000620045 248 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 TADA2A-212ENST00000620367 1043 ntTSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC091965.5-201ENST00000624785 342 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LINC01320-210ENST00000626008 929 ntTSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AL121768.1-201ENST00000613917 2544 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 DBF4P1-201ENST00000412976 1892 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 CAPN6-201ENST00000324068 3568 ntAPPRIS P1 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 AC079753.1-201ENST00000623243 3868 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 OR2T29-202ENST00000641069 2637 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 RAD23B-202ENST00000416373 3835 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 HSPD1P8-201ENST00000400121 1658 ntBASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 FANCD2-203ENST00000419585 5185 ntAPPRIS ALT2 TSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 TMEM133-201ENST00000303130 1953 ntAPPRIS P1 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 KCNAB1-205ENST00000471742 3301 ntTSL 1 (best) BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 FLJ12825-201ENST00000515617 3942 ntTSL 2 BASIC6.04□□□□□ -1.44
TRIM39Q9HCM9 LUZP2-201ENST00000336930 3553 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC109315.1-201ENST00000584143 1347 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ZNF112-202ENST00000354340 3654 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 NAPEPLD-203ENST00000417955 4988 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 LINC01524-201ENST00000428009 4390 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 UBE3A-205ENST00000566215 3176 ntAPPRIS P3 TSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 CEACAMP10-201ENST00000489959 1721 ntTSL 2 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 FCGR1B-209ENST00000616817 1584 ntAPPRIS ALT2 TSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 OR6C75-202ENST00000641576 4569 ntAPPRIS P1 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC087667.1-201ENST00000500180 1422 ntTSL 1 (best) BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 RNA5SP375-201ENST00000362975 119 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 RNU6-839P-201ENST00000363347 108 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 Y_RNA.311-201ENST00000365068 96 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 MIR130B-202ENST00000385018 82 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AL161909.1-201ENST00000397390 712 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AL031577.2-201ENST00000404133 280 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 SNORA11.5-201ENST00000408163 128 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC116036.1-201ENST00000412199 367 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 LINC01427-201ENST00000420928 504 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ATP5A1P8-201ENST00000423669 1291 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 VN1R21P-201ENST00000426703 765 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AL354714.4-201ENST00000427339 575 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AP000295.1-201ENST00000433395 1000 ntAPPRIS P1 TSL 5 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 MTCO2P16-201ENST00000436962 677 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 CBX1P4-201ENST00000439415 457 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 ATP5LP2-201ENST00000440646 311 ntBASIC6.03□□□□□ -1.44
TRIM39Q9HCM9 AC092168.1-201ENST00000443030 236 ntTSL 5 BASIC6.03□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 110.9 ms