Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 VN1R32P-201ENST00000452234 905 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC118758.1-202ENST00000454719 225 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 SULT1D1P-201ENST00000458020 882 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC010683.1-201ENST00000473673 378 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC090638.1-201ENST00000498296 909 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC104779.1-201ENST00000503557 441 ntTSL 3 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 MTCO2P32-201ENST00000514865 403 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 RNU6-150P-201ENST00000516237 95 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 CHCHD7-210ENST00000521524 703 ntTSL 5 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AP000790.1-201ENST00000528891 737 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 KCTD21-AS1-206ENST00000532831 856 ntTSL 2 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AP001360.2-201ENST00000534423 562 ntTSL 4 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC022509.1-202ENST00000537525 494 ntTSL 4 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 OR1E3-201ENST00000575608 948 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 PPIAL4A-201ENST00000577856 660 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC090844.2-201ENST00000578802 436 ntTSL 4 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC243756.1-201ENST00000584068 660 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC026898.1-201ENST00000586404 571 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 IGFL2-AS1-206ENST00000601263 446 ntTSL 3 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC004805.3-201ENST00000603178 310 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC087752.4-201ENST00000605911 462 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC107214.2-201ENST00000608204 634 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC010333.3-201ENST00000615100 402 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC068722.2-201ENST00000618734 544 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 SEC23A-215ENST00000625395 261 ntTSL 5 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AL928596.1-201ENST00000636738 632 ntTSL 2 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC018793.2-201ENST00000639584 585 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC018793.3-201ENST00000640805 585 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 SMG1-201ENST00000330588 1588 ntTSL 5 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 ARHGAP21-201ENST00000320481 4343 ntTSL 5 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AC105114.1-201ENST00000624795 1862 ntBASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 NALCN-201ENST00000251127 6818 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 SCP2-212ENST00000488965 3926 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 AL360014.1-201ENST00000562922 2084 ntTSL 3 BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 SLC25A12-202ENST00000422440 2979 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 TRMT13-202ENST00000370141 3129 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 ENPP3-203ENST00000414305 3418 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
TRAIPQ9BWF2 NEMP2-202ENST00000409150 6168 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 FCHO2-207ENST00000512348 2700 ntTSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC107884.1-202ENST00000622955 2703 ntTSL 5 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 SLC26A5-207ENST00000393729 2422 ntTSL 5 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 HTR4-206ENST00000520086 2272 ntTSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 SMCO3-201ENST00000316048 2104 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 ZNF682-209ENST00000597972 1538 ntAPPRIS ALT2 TSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 SULF1-201ENST00000260128 5710 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 PCDH18-202ENST00000412923 5102 ntAPPRIS ALT1 TSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 PCAT5-201ENST00000626667 3550 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 ZMAT1-206ENST00000540921 3139 ntAPPRIS P1 TSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 VPS39-202ENST00000348544 2661 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 BNC1-202ENST00000569704 3169 ntAPPRIS ALT2 TSL 5 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 OR4F6-201ENST00000328882 1238 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 RNU4-91P-201ENST00000364778 135 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 SUGT1P2-201ENST00000379452 992 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC007066.1-201ENST00000392902 381 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 PSMA6P1-201ENST00000400275 741 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 VN1R12P-201ENST00000403778 876 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 ZNF603P-201ENST00000405613 487 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AL021026.1-201ENST00000422841 658 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 CYCSP46-201ENST00000423569 204 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 LINC00352-201ENST00000425800 552 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC099782.1-201ENST00000425889 474 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AL451042.1-201ENST00000426353 544 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 LINC00382-201ENST00000427918 890 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 RPL36P19-201ENST00000430744 301 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 TRIM60P3Y-201ENST00000432201 673 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 USP9YP28-201ENST00000435142 589 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC105402.2-201ENST00000438503 358 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 DSCAM-IT1-201ENST00000440363 720 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AL121957.1-201ENST00000441532 338 ntTSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 COX6CP12-201ENST00000446748 202 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 SRGAP3-AS4-201ENST00000449023 377 ntTSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 DNAJC19P1-201ENST00000455312 319 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 ZBTB20-AS3-201ENST00000498630 464 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC016687.2-201ENST00000504795 541 ntTSL 5 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC098868.1-201ENST00000512628 624 ntTSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 RNA5SP228-201ENST00000516232 133 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC246817.1-201ENST00000520024 610 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AL133166.1-201ENST00000551040 1034 ntTSL 4 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AL353708.2-201ENST00000567486 447 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 SYPL1P2-201ENST00000582878 727 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 ABBA01006766.1-201ENST00000584728 294 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC011477.5-201ENST00000586571 259 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC006305.2-201ENST00000589617 552 ntTSL 4 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AL589765.6-201ENST00000601909 549 ntBASIC7.22□□□□□ -1.25
TRAIPQ9BWF2 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 75.2 ms