Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AK9-204ENST00000424296 6326 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
FOXF1Q12946 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 RNU1-83P-201ENST00000363426 164 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 MIR298-201ENST00000401212 88 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 MAST4-207ENST00000407621 559 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXF1Q12946 AL358176.3-201ENST00000420757 454 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC4.23□□□□□ -1.73
FOXF1Q12946 USP9YP9-201ENST00000429406 715 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 TDGF1P1-201ENST00000445734 527 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 AL031584.1-201ENST00000447169 754 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 AL512328.1-202ENST00000452640 850 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXF1Q12946 RPL12P20-201ENST00000475538 479 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 OR11I1P-201ENST00000486033 954 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 ARL4AP1-201ENST00000503220 705 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXF1Q12946 AC099550.1-201ENST00000515495 871 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXF1Q12946 HDAC2-AS2-209ENST00000519270 1244 ntTSL 4 BASIC4.23□□□□□ -1.73
FOXF1Q12946 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 AC008147.3-201ENST00000548666 354 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 AC009142.1-202ENST00000562565 563 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXF1Q12946 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.23□□□□□ -1.73
FOXF1Q12946 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXF1Q12946 MIR99AHG-211ENST00000602323 475 ntTSL 5 BASIC4.23□□□□□ -1.73
FOXF1Q12946 AC004948.1-201ENST00000609858 672 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 DAOA-211ENST00000618629 1368 ntAPPRIS P3 TSL 5 BASIC4.23□□□□□ -1.73
FOXF1Q12946 CARF-203ENST00000414439 2099 ntTSL 2 BASIC4.23□□□□□ -1.73
FOXF1Q12946 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.23□□□□□ -1.73
FOXF1Q12946 LIX1-201ENST00000274382 4026 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC4.23□□□□□ -1.73
FOXF1Q12946 ZNF382-204ENST00000439428 2742 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
FOXF1Q12946 OR56A3-205ENST00000641905 4595 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
FOXF1Q12946 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 SGIP1-204ENST00000371039 4080 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 OBSCN-210ENST00000570156 26925 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 UBE3A-203ENST00000428984 2986 ntAPPRIS P3 TSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 AC103591.2-201ENST00000265259 766 ntBASIC4.22□□□□□ -1.73
FOXF1Q12946 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
FOXF1Q12946 RN7SKP106-201ENST00000410832 272 ntBASIC4.22□□□□□ -1.73
FOXF1Q12946 RBMY2KP-201ENST00000418221 992 ntBASIC4.22□□□□□ -1.73
FOXF1Q12946 AC073521.1-201ENST00000418679 625 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXF1Q12946 LINC00458-202ENST00000427299 1030 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 PCBP1-AS1-224ENST00000429599 1045 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 FO393401.1-201ENST00000453914 600 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXF1Q12946 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXF1Q12946 AC098799.3-201ENST00000506095 438 ntBASIC4.22□□□□□ -1.73
FOXF1Q12946 LINC02506-201ENST00000513211 734 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXF1Q12946 SDCBP-207ENST00000520168 1097 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXF1Q12946 ASPH-226ENST00000522919 1277 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXF1Q12946 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXF1Q12946 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.22□□□□□ -1.73
FOXF1Q12946 AC243960.1-203ENST00000595395 599 ntTSL 4 BASIC4.22□□□□□ -1.73
FOXF1Q12946 AC130352.1-201ENST00000602979 661 ntBASIC4.22□□□□□ -1.73
FOXF1Q12946 AC073091.2-201ENST00000603205 907 ntBASIC4.22□□□□□ -1.73
FOXF1Q12946 AL161616.1-201ENST00000611867 286 ntBASIC4.22□□□□□ -1.73
FOXF1Q12946 OR10X1-201ENST00000623167 981 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
FOXF1Q12946 SMARCA2-231ENST00000634931 939 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXF1Q12946 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC4.22□□□□□ -1.73
FOXF1Q12946 PTPRD-201ENST00000355233 8251 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 HACD3-211ENST00000569894 1471 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 MRPL50-201ENST00000374865 3332 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 WDR7-201ENST00000254442 14083 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC4.22□□□□□ -1.73
FOXF1Q12946 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC4.22□□□□□ -1.73
FOXF1Q12946 MTX3-203ENST00000512560 4799 ntTSL 2 BASIC4.22□□□□□ -1.73
FOXF1Q12946 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
FOXF1Q12946 CNTN1-202ENST00000348761 3328 ntTSL 1 (best) BASIC4.21□□□□□ -1.73
FOXF1Q12946 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
FOXF1Q12946 TCHHL1-201ENST00000368806 3603 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.73
FOXF1Q12946 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.21□□□□□ -1.74
FOXF1Q12946 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.21□□□□□ -1.74
FOXF1Q12946 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
FOXF1Q12946 AC064875.1-201ENST00000425974 1942 ntTSL 2 BASIC4.21□□□□□ -1.74
FOXF1Q12946 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXF1Q12946 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.21□□□□□ -1.74
FOXF1Q12946 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.74
FOXF1Q12946 SNORA71.2-201ENST00000364941 134 ntBASIC4.21□□□□□ -1.74
FOXF1Q12946 RNA5SP296-201ENST00000410523 111 ntBASIC4.21□□□□□ -1.74
FOXF1Q12946 EIF4A1P1-201ENST00000420241 934 ntBASIC4.21□□□□□ -1.74
FOXF1Q12946 ATP5A1P7-201ENST00000453978 1279 ntBASIC4.21□□□□□ -1.74
FOXF1Q12946 CYCSP34-201ENST00000458172 304 ntBASIC4.21□□□□□ -1.74
FOXF1Q12946 FAM107B-218ENST00000479731 570 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
FOXF1Q12946 MRPS33-209ENST00000496958 688 ntAPPRIS P1 TSL 3 BASIC4.21□□□□□ -1.74
FOXF1Q12946 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.21□□□□□ -1.74
FOXF1Q12946 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC4.21□□□□□ -1.74
FOXF1Q12946 AC097460.1-204ENST00000515026 764 ntTSL 5 BASIC4.21□□□□□ -1.74
FOXF1Q12946 IGKV1-32-201ENST00000519290 311 ntBASIC4.21□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 73.7 ms