Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 AC239809.1-201ENST00000450470 217 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 LINC01941-201ENST00000455174 624 ntTSL 2 BASIC5.06□□□□□ -1.6
HNF4AP41235 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.06□□□□□ -1.6
HNF4AP41235 RPL7P48-201ENST00000461513 746 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 RPL7P6-201ENST00000480903 738 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 RPL7P39-201ENST00000481157 744 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 PGBD4P4-201ENST00000509673 613 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 RNA5SP373-201ENST00000517271 95 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.06□□□□□ -1.6
HNF4AP41235 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 AC022884.2-201ENST00000578535 580 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 AC090525.3-201ENST00000605601 189 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 AC022467.1-201ENST00000614738 749 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 PSG7-202ENST00000446844 2227 ntAPPRIS P5 TSL 5 BASIC5.06□□□□□ -1.6
HNF4AP41235 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.06□□□□□ -1.6
HNF4AP41235 AC092747.4-201ENST00000620519 1861 ntBASIC5.06□□□□□ -1.6
HNF4AP41235 MTUS1-201ENST00000262102 6160 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
HNF4AP41235 WDR17-204ENST00000507824 4119 ntTSL 5 BASIC5.06□□□□□ -1.6
HNF4AP41235 OBSCN-205ENST00000422127 24060 ntTSL 5 BASIC5.06□□□□□ -1.6
HNF4AP41235 AC089984.1-201ENST00000552780 1431 ntTSL 3 BASIC5.06□□□□□ -1.6
HNF4AP41235 CFH-206ENST00000630130 1658 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 AC011493.1-201ENST00000596753 1632 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 ZNF788-202ENST00000397759 777 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC5.05□□□□□ -1.6
HNF4AP41235 RN7SKP229-201ENST00000410465 302 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 FLJ27354-201ENST00000415584 788 ntTSL 2 BASIC5.05□□□□□ -1.6
HNF4AP41235 AL358176.3-201ENST00000420757 454 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.05□□□□□ -1.6
HNF4AP41235 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 AL160175.1-201ENST00000428124 247 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC073069.1-201ENST00000428657 441 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AL050338.2-202ENST00000431609 956 ntTSL 2 BASIC5.05□□□□□ -1.6
HNF4AP41235 MTND2P21-201ENST00000436242 1042 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC5.05□□□□□ -1.6
HNF4AP41235 C21orf91-OT1-203ENST00000439392 497 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.05□□□□□ -1.6
HNF4AP41235 AC108161.1-201ENST00000461060 402 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC018638.3-201ENST00000461273 132 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 PGAM1P13-201ENST00000507497 754 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 AC012400.1-201ENST00000518452 381 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 IGKV2D-10-201ENST00000520194 281 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC103681.1-202ENST00000534342 449 ntTSL 3 BASIC5.05□□□□□ -1.6
HNF4AP41235 AC006349.1-201ENST00000555526 235 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC007225.2-201ENST00000562529 256 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC110743.1-201ENST00000584870 478 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 AL008729.2-201ENST00000606393 473 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 LINC00397-202ENST00000606785 409 ntTSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.05□□□□□ -1.6
HNF4AP41235 AC037198.3-201ENST00000616754 526 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC009318.3-201ENST00000616916 503 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AC118658.2-201ENST00000618697 459 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 LINC00284-211ENST00000620454 534 ntTSL 4 BASIC5.05□□□□□ -1.6
HNF4AP41235 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.05□□□□□ -1.6
HNF4AP41235 AP002505.2-201ENST00000623585 696 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 CASC19-222ENST00000641321 1173 ntBASIC5.05□□□□□ -1.6
HNF4AP41235 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 SMC2-AS1-201ENST00000603487 7020 ntTSL 2 BASIC5.05□□□□□ -1.6
HNF4AP41235 NUP155-202ENST00000381843 4200 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 CXCL9-201ENST00000264888 2740 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 OR8B3-202ENST00000641139 2170 ntAPPRIS P1 BASIC5.05□□□□□ -1.6
HNF4AP41235 RBBP6-203ENST00000381039 3384 ntTSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 MED13-201ENST00000397786 10465 ntAPPRIS P1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.05□□□□□ -1.6
HNF4AP41235 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC5.05□□□□□ -1.6
HNF4AP41235 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HNF4AP41235 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HNF4AP41235 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HNF4AP41235 SLCO1C1-201ENST00000266509 3365 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HNF4AP41235 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HNF4AP41235 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.04□□□□□ -1.6
HNF4AP41235 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HNF4AP41235 OR2AE1-201ENST00000316368 1071 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HNF4AP41235 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
HNF4AP41235 SNORA67-201ENST00000384423 137 ntBASIC5.04□□□□□ -1.6
HNF4AP41235 SMIM2-IT1-201ENST00000415082 478 ntTSL 3 BASIC5.04□□□□□ -1.6
HNF4AP41235 AC009238.2-201ENST00000431026 355 ntBASIC5.04□□□□□ -1.6
HNF4AP41235 AL024474.2-201ENST00000431309 501 ntTSL 3 BASIC5.04□□□□□ -1.6
HNF4AP41235 MTCO1P52-201ENST00000433928 531 ntBASIC5.04□□□□□ -1.6
HNF4AP41235 AL357520.1-201ENST00000441557 453 ntBASIC5.04□□□□□ -1.6
HNF4AP41235 AL355592.1-201ENST00000450292 386 ntTSL 2 BASIC5.04□□□□□ -1.6
HNF4AP41235 TPRKBP1-201ENST00000456243 481 ntBASIC5.04□□□□□ -1.6
HNF4AP41235 TPT1P1-201ENST00000458495 518 ntBASIC5.04□□□□□ -1.6
HNF4AP41235 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5.04□□□□□ -1.6
HNF4AP41235 AC100784.1-201ENST00000522790 310 ntBASIC5.04□□□□□ -1.6
HNF4AP41235 ST3GAL3-233ENST00000531816 344 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
HNF4AP41235 LINC02366-202ENST00000541949 696 ntTSL 3 BASIC5.04□□□□□ -1.6
HNF4AP41235 AC091814.1-201ENST00000545258 719 ntTSL 3 BASIC5.04□□□□□ -1.6
HNF4AP41235 OR6C68-201ENST00000548615 939 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 88.3 ms