Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 NPM1P40-201ENST00000412758 733 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX1P28360 IFNAR2-206ENST00000413881 710 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX1P28360 AKR1B10P1-201ENST00000425765 942 ntBASIC6.71□□□□□ -1.34
MSX1P28360 USP9YP16-201ENST00000430287 407 ntBASIC6.71□□□□□ -1.34
MSX1P28360 TXNP5-201ENST00000441043 315 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC092809.1-201ENST00000441469 474 ntBASIC6.71□□□□□ -1.34
MSX1P28360 RPS27AP15-201ENST00000447672 466 ntBASIC6.71□□□□□ -1.34
MSX1P28360 ENTPD3-AS1-204ENST00000452768 724 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX1P28360 NDUFA5P7-201ENST00000452914 242 ntBASIC6.71□□□□□ -1.34
MSX1P28360 USP9YP23-201ENST00000455085 407 ntBASIC6.71□□□□□ -1.34
MSX1P28360 DHFRP3-201ENST00000455595 559 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX1P28360 TUBBP11-201ENST00000472255 252 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC117394.1-201ENST00000477323 567 ntBASIC6.71□□□□□ -1.34
MSX1P28360 RPS27P23-201ENST00000487608 251 ntBASIC6.71□□□□□ -1.34
MSX1P28360 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 AC006487.2-201ENST00000503624 577 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX1P28360 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX1P28360 PCBP2P3-201ENST00000509726 843 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX1P28360 LY96-202ENST00000518893 430 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX1P28360 AC025524.2-202ENST00000523042 535 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX1P28360 AF117829.1-210ENST00000523859 696 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX1P28360 AP000873.2-209ENST00000528083 547 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX1P28360 AP006587.5-201ENST00000532033 739 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX1P28360 DPPA3P2-202ENST00000557188 1219 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC010333.1-201ENST00000563116 563 ntTSL 4 BASIC6.71□□□□□ -1.34
MSX1P28360 AC012186.2-201ENST00000569353 321 ntTSL 3 BASIC6.71□□□□□ -1.34
MSX1P28360 THCAT158-201ENST00000575039 535 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX1P28360 AC010327.2-201ENST00000587647 488 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC010525.2-201ENST00000590920 195 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC010591.1-201ENST00000603941 649 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC115621.1-201ENST00000604653 858 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC012510.1-201ENST00000607946 759 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AL359094.1-211ENST00000608350 335 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX1P28360 AC243773.3-201ENST00000613270 256 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC007347.2-201ENST00000623044 180 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC106782.7-201ENST00000624024 418 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC133555.5-201ENST00000624430 418 ntBASIC6.71□□□□□ -1.34
MSX1P28360 AC009161.2-201ENST00000624626 138 ntBASIC6.71□□□□□ -1.34
MSX1P28360 C8orf34-208ENST00000523686 1948 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.34
MSX1P28360 ANAPC5-204ENST00000441917 2147 ntTSL 5 BASIC6.71□□□□□ -1.34
MSX1P28360 CEACAM20-205ENST00000620096 1494 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 STN1-202ENST00000369764 1311 ntAPPRIS P1 TSL 2 BASIC6.71□□□□□ -1.34
MSX1P28360 ZFP42-203ENST00000618147 2338 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
MSX1P28360 OR5A2-201ENST00000302040 6318 ntAPPRIS P1 BASIC6.71□□□□□ -1.34
MSX1P28360 CHRM5-202ENST00000557872 2687 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 SAMMSON-203ENST00000641005 2168 ntBASIC6.71□□□□□ -1.34
MSX1P28360 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.71□□□□□ -1.34
MSX1P28360 DNAJC16-202ENST00000375847 6069 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 CCDC77-201ENST00000239830 2371 ntAPPRIS P3 TSL 2 BASIC6.71□□□□□ -1.34
MSX1P28360 ZADH2-202ENST00000537114 3205 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSX1P28360 DUBR-202ENST00000466734 2737 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 ADGRL3-207ENST00000507625 4843 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 BVES-AS1-202ENST00000369122 1716 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 PRRC2C-202ENST00000367742 10366 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
MSX1P28360 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 ZNF182-202ENST00000396965 3586 ntAPPRIS P4 TSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 SP110-203ENST00000358662 2337 ntAPPRIS ALT2 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 NOL4-203ENST00000538587 1979 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 AMBN-203ENST00000613447 1997 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 AL589993.1-201ENST00000407450 2524 ntBASIC6.7□□□□□ -1.34
MSX1P28360 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 UGT2B27P-201ENST00000505092 1620 ntBASIC6.7□□□□□ -1.34
MSX1P28360 AC100858.3-201ENST00000533516 1605 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 POLA1-201ENST00000379059 5440 ntAPPRIS P3 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 POLA1-206ENST00000611764 5434 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 OR4Q3-201ENST00000331723 942 ntAPPRIS P1 BASIC6.7□□□□□ -1.34
MSX1P28360 SNRPEP3-201ENST00000338402 276 ntBASIC6.7□□□□□ -1.34
MSX1P28360 RN7SKP174-201ENST00000363803 330 ntBASIC6.7□□□□□ -1.34
MSX1P28360 RNA5SP396-201ENST00000364834 120 ntBASIC6.7□□□□□ -1.34
MSX1P28360 PRIM2-202ENST00000370687 909 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX1P28360 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 MRPL32P1-201ENST00000406301 247 ntBASIC6.7□□□□□ -1.34
MSX1P28360 AC007389.1-203ENST00000414811 556 ntTSL 4 BASIC6.7□□□□□ -1.34
MSX1P28360 AL133268.2-201ENST00000416595 430 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX1P28360 AL645937.1-202ENST00000421799 937 ntBASIC6.7□□□□□ -1.34
MSX1P28360 AC007394.1-201ENST00000421941 531 ntBASIC6.7□□□□□ -1.34
MSX1P28360 KRTAP3-4P-201ENST00000430780 280 ntBASIC6.7□□□□□ -1.34
MSX1P28360 ATP5JP1-201ENST00000431631 322 ntBASIC6.7□□□□□ -1.34
MSX1P28360 AC018467.1-202ENST00000432612 533 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX1P28360 AC068058.1-201ENST00000435782 389 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 AF274573.2-201ENST00000437772 520 ntTSL 5 BASIC6.7□□□□□ -1.34
MSX1P28360 AL592114.2-201ENST00000440142 532 ntBASIC6.7□□□□□ -1.34
MSX1P28360 AL136380.1-201ENST00000447970 162 ntBASIC6.7□□□□□ -1.34
MSX1P28360 HIGD1AP16-201ENST00000450986 258 ntBASIC6.7□□□□□ -1.34
MSX1P28360 PMS2P11-201ENST00000451831 574 ntBASIC6.7□□□□□ -1.34
MSX1P28360 GAPDHP56-201ENST00000506031 988 ntBASIC6.7□□□□□ -1.34
MSX1P28360 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC6.7□□□□□ -1.34
MSX1P28360 PAIP2-205ENST00000510080 858 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 MEPE-206ENST00000511670 550 ntTSL 4 BASIC6.7□□□□□ -1.34
MSX1P28360 TEK-204ENST00000519097 3836 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSX1P28360 MYL6-211ENST00000548580 528 ntTSL 2 BASIC6.7□□□□□ -1.34
MSX1P28360 LINC02328-203ENST00000557195 682 ntTSL 3 BASIC6.7□□□□□ -1.34
MSX1P28360 MIR378H-201ENST00000579966 83 ntBASIC6.7□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms