Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC109462.1-201ENST00000491087 368 ntBASIC4.56□□□□□ -1.68
SDC1P18827 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.56□□□□□ -1.68
SDC1P18827 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.56□□□□□ -1.68
SDC1P18827 AC093305.1-201ENST00000514105 522 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 RN7SKP66-201ENST00000516681 231 ntBASIC4.56□□□□□ -1.68
SDC1P18827 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.56□□□□□ -1.68
SDC1P18827 OR10D4P-201ENST00000525892 951 ntBASIC4.56□□□□□ -1.68
SDC1P18827 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.56□□□□□ -1.68
SDC1P18827 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 SNHG1-205ENST00000537869 1038 ntTSL 3 BASIC4.56□□□□□ -1.68
SDC1P18827 AC095350.2-201ENST00000544034 201 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 AC090022.1-201ENST00000546569 311 ntBASIC4.56□□□□□ -1.68
SDC1P18827 TWF1-207ENST00000548315 1170 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SDC1P18827 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 AC079075.1-201ENST00000559543 878 ntBASIC4.56□□□□□ -1.68
SDC1P18827 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.56□□□□□ -1.68
SDC1P18827 AP002884.5-201ENST00000595053 1132 ntBASIC4.56□□□□□ -1.68
SDC1P18827 AC020910.3-201ENST00000603701 874 ntBASIC4.56□□□□□ -1.68
SDC1P18827 AP001521.2-201ENST00000608772 546 ntBASIC4.56□□□□□ -1.68
SDC1P18827 AC097505.1-201ENST00000610199 565 ntBASIC4.56□□□□□ -1.68
SDC1P18827 AC009163.6-201ENST00000612367 342 ntBASIC4.56□□□□□ -1.68
SDC1P18827 ZNF479-203ENST00000620639 1239 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 AC104820.1-201ENST00000624183 307 ntBASIC4.56□□□□□ -1.68
SDC1P18827 UOX-205ENST00000640983 544 ntTSL 4 BASIC4.56□□□□□ -1.68
SDC1P18827 AL139254.3-201ENST00000641097 674 ntBASIC4.56□□□□□ -1.68
SDC1P18827 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SDC1P18827 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.56□□□□□ -1.68
SDC1P18827 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SDC1P18827 MACF1-203ENST00000361689 17538 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 AP000542.2-201ENST00000623199 6179 ntBASIC4.56□□□□□ -1.68
SDC1P18827 BMPR1B-202ENST00000394931 1922 ntAPPRIS P1 TSL 1 (best) BASIC4.56□□□□□ -1.68
SDC1P18827 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC4.56□□□□□ -1.68
SDC1P18827 TC2N-203ENST00000435962 5146 ntAPPRIS P1 TSL 2 BASIC4.56□□□□□ -1.68
SDC1P18827 SLAIN1-201ENST00000267219 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 ZNF568-216ENST00000619231 3797 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
SDC1P18827 PLCB4-204ENST00000378501 5833 ntAPPRIS P4 TSL 5 BASIC4.55□□□□□ -1.68
SDC1P18827 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC4.55□□□□□ -1.68
SDC1P18827 DLG1-216ENST00000450955 2682 ntAPPRIS ALT1 TSL 5 BASIC4.55□□□□□ -1.68
SDC1P18827 GCSAML-206ENST00000527084 1308 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 USP29-202ENST00000598197 3284 ntAPPRIS P1 BASIC4.55□□□□□ -1.68
SDC1P18827 RN7SKP95-201ENST00000362860 303 ntBASIC4.55□□□□□ -1.68
SDC1P18827 U3.30-201ENST00000391308 210 ntBASIC4.55□□□□□ -1.68
SDC1P18827 HMGB3P7-201ENST00000400214 611 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AL080315.1-201ENST00000406055 466 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AL020993.1-201ENST00000420172 297 ntTSL 3 BASIC4.55□□□□□ -1.68
SDC1P18827 AC012519.1-201ENST00000424588 610 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.55□□□□□ -1.68
SDC1P18827 ARAFP2-201ENST00000440565 559 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AL137076.1-201ENST00000441046 551 ntTSL 2 BASIC4.55□□□□□ -1.68
SDC1P18827 AL606490.8-201ENST00000441624 319 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AC092647.3-201ENST00000443044 633 ntBASIC4.55□□□□□ -1.68
SDC1P18827 TXNP2-201ENST00000443918 295 ntBASIC4.55□□□□□ -1.68
SDC1P18827 GHRL-209ENST00000446937 217 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 AC104651.2-201ENST00000447549 528 ntBASIC4.55□□□□□ -1.68
SDC1P18827 SLC25A18P1-201ENST00000449385 454 ntBASIC4.55□□□□□ -1.68
SDC1P18827 RPL31P20-201ENST00000449593 360 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AC016724.1-201ENST00000453215 421 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AL450344.1-201ENST00000456018 639 ntTSL 2 BASIC4.55□□□□□ -1.68
SDC1P18827 AC006499.3-201ENST00000506077 748 ntBASIC4.55□□□□□ -1.68
SDC1P18827 LINC02465-204ENST00000514892 481 ntTSL 2 BASIC4.55□□□□□ -1.68
SDC1P18827 AC068389.4-201ENST00000531379 689 ntTSL 3 BASIC4.55□□□□□ -1.68
SDC1P18827 LINC02284-202ENST00000560924 566 ntTSL 4 BASIC4.55□□□□□ -1.68
SDC1P18827 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC4.55□□□□□ -1.68
SDC1P18827 DCTN5-207ENST00000568272 523 ntTSL 2 BASIC4.55□□□□□ -1.68
SDC1P18827 RN7SL802P-201ENST00000577858 299 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.55□□□□□ -1.68
SDC1P18827 AC007497.1-201ENST00000610421 561 ntBASIC4.55□□□□□ -1.68
SDC1P18827 EIF3FP1-201ENST00000613970 806 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AL513314.2-206ENST00000617276 434 ntTSL 5 BASIC4.55□□□□□ -1.68
SDC1P18827 AC234782.5-201ENST00000617723 324 ntBASIC4.55□□□□□ -1.68
SDC1P18827 AC015722.2-201ENST00000622210 551 ntBASIC4.55□□□□□ -1.68
SDC1P18827 CGA-206ENST00000630630 832 ntTSL 2 BASIC4.55□□□□□ -1.68
SDC1P18827 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC4.55□□□□□ -1.68
SDC1P18827 TMEM30CP-203ENST00000637814 1035 ntBASIC4.55□□□□□ -1.68
SDC1P18827 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 CENPE-208ENST00000611174 8260 ntTSL 5 BASIC4.55□□□□□ -1.68
SDC1P18827 PCDH11X-207ENST00000406881 4156 ntAPPRIS ALT2 TSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 AC115220.1-201ENST00000330020 1453 ntAPPRIS P1 TSL 3 BASIC4.55□□□□□ -1.68
SDC1P18827 PIK3CB-214ENST00000544716 3181 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
SDC1P18827 RBPJP2-201ENST00000618187 1444 ntBASIC4.55□□□□□ -1.68
SDC1P18827 PIGN-242ENST00000640145 4505 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
SDC1P18827 PTPN13-209ENST00000511467 8076 ntAPPRIS P4 TSL 2 BASIC4.54□□□□□ -1.68
SDC1P18827 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 SLCO1A2-201ENST00000307378 7682 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
SDC1P18827 RNU4-44P-201ENST00000363050 141 ntBASIC4.54□□□□□ -1.68
SDC1P18827 RNU4-4P-201ENST00000364588 130 ntBASIC4.54□□□□□ -1.68
SDC1P18827 MT-RNR1-201ENST00000389680 954 ntBASIC4.54□□□□□ -1.68
SDC1P18827 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC4.54□□□□□ -1.68
SDC1P18827 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC4.54□□□□□ -1.68
SDC1P18827 AL591468.1-201ENST00000417932 573 ntTSL 3 BASIC4.54□□□□□ -1.68
SDC1P18827 AC096711.3-201ENST00000420721 582 ntTSL 4 BASIC4.54□□□□□ -1.68
SDC1P18827 GLUD1P9-201ENST00000420997 1173 ntBASIC4.54□□□□□ -1.68
SDC1P18827 AL356806.1-201ENST00000422524 916 ntBASIC4.54□□□□□ -1.68
SDC1P18827 FABP7P1-201ENST00000424004 391 ntBASIC4.54□□□□□ -1.68
SDC1P18827 MTCO1P45-201ENST00000431457 267 ntBASIC4.54□□□□□ -1.68
SDC1P18827 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 82.5 ms