Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC4.77□□□□□ -1.65
HMGA1P17096 KRTAP24-1-201ENST00000340345 1650 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HMGA1P17096 MAP3K19-201ENST00000358371 3719 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 RAB23-201ENST00000317483 2546 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 PLCH1-201ENST00000334686 6128 ntAPPRIS P3 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 RNF213-204ENST00000508628 17730 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
HMGA1P17096 MTHFD2P5-201ENST00000320415 844 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 SIRPD-201ENST00000381621 823 ntAPPRIS ALT2 TSL 3 BASIC4.76□□□□□ -1.65
HMGA1P17096 OTUD6B-202ENST00000404789 1089 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC4.76□□□□□ -1.65
HMGA1P17096 TRIM60P9Y-201ENST00000438459 816 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 CBX1P1-201ENST00000440184 427 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 TRIM60P11Y-201ENST00000445313 801 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 AC103987.1-201ENST00000473394 348 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 IGKV2D-10-201ENST00000520194 281 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 AC079015.1-201ENST00000521793 596 ntTSL 2 BASIC4.76□□□□□ -1.65
HMGA1P17096 AP002518.2-201ENST00000544925 393 ntTSL 5 BASIC4.76□□□□□ -1.65
HMGA1P17096 AL359219.2-201ENST00000555184 348 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 KPNA2P3-201ENST00000584190 848 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
HMGA1P17096 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC4.76□□□□□ -1.65
HMGA1P17096 AC006338.2-201ENST00000616864 791 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 CDC23-202ENST00000394886 3155 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 FTX-210ENST00000603037 8347 ntTSL 5 BASIC4.76□□□□□ -1.65
HMGA1P17096 ZC3H12B-201ENST00000338957 7256 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 OR6K3-201ENST00000368145 1844 ntAPPRIS P1 BASIC4.76□□□□□ -1.65
HMGA1P17096 ICE2P1-201ENST00000512800 1849 ntBASIC4.76□□□□□ -1.65
HMGA1P17096 ERGIC2-201ENST00000360150 5014 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 DCX-211ENST00000637570 6162 ntAPPRIS ALT1 TSL 5 BASIC4.76□□□□□ -1.65
HMGA1P17096 SCN11A-203ENST00000456224 5262 ntAPPRIS ALT2 TSL 5 BASIC4.76□□□□□ -1.65
HMGA1P17096 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC4.76□□□□□ -1.65
HMGA1P17096 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
HMGA1P17096 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 PHACTR2-207ENST00000427704 9531 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.75□□□□□ -1.65
HMGA1P17096 EYA4-206ENST00000431403 2154 ntTSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HMGA1P17096 ZNF214-204ENST00000536068 2562 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 DTNA-231ENST00000598774 2418 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 HIF1AN-201ENST00000299163 13011 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 CCNT2-201ENST00000264157 6917 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 NBPF14-206ENST00000614999 10080 ntTSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 LYST-202ENST00000389794 12985 ntTSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 MUCL1-201ENST00000308796 470 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 RNU1-130P-201ENST00000363930 160 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC4.75□□□□□ -1.65
HMGA1P17096 AL049693.1-201ENST00000402760 611 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 AL080315.1-201ENST00000406055 466 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.75□□□□□ -1.65
HMGA1P17096 AC098872.1-201ENST00000413304 543 ntTSL 3 BASIC4.75□□□□□ -1.65
HMGA1P17096 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC4.75□□□□□ -1.65
HMGA1P17096 AC105940.1-201ENST00000434265 353 ntTSL 3 BASIC4.75□□□□□ -1.65
HMGA1P17096 MRPL48P1-201ENST00000445390 636 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 RPL23AP43-201ENST00000446445 471 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 PRKACB-213ENST00000446538 1112 ntTSL 2 BASIC4.75□□□□□ -1.65
HMGA1P17096 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.75□□□□□ -1.65
HMGA1P17096 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.75□□□□□ -1.65
HMGA1P17096 RPS27AP16-201ENST00000492222 470 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 F11-205ENST00000492972 1204 ntTSL 2 BASIC4.75□□□□□ -1.65
HMGA1P17096 AC105914.2-201ENST00000507525 233 ntTSL 3 BASIC4.75□□□□□ -1.65
HMGA1P17096 GLRX-206ENST00000508780 533 ntAPPRIS P1 TSL 4 BASIC4.75□□□□□ -1.65
HMGA1P17096 AC015795.1-201ENST00000513669 327 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 IGLVIV-65-201ENST00000517313 360 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 AC010476.1-201ENST00000519111 851 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 AC090572.2-201ENST00000520649 761 ntTSL 3 BASIC4.75□□□□□ -1.65
HMGA1P17096 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC4.75□□□□□ -1.65
HMGA1P17096 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 OR8A2P-201ENST00000528631 952 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC4.75□□□□□ -1.65
HMGA1P17096 AL132780.1-201ENST00000548819 556 ntTSL 4 BASIC4.75□□□□□ -1.65
HMGA1P17096 ZFAND6-204ENST00000558087 909 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 NUDT7-203ENST00000563839 316 ntTSL 3 BASIC4.75□□□□□ -1.65
HMGA1P17096 AC015912.2-201ENST00000571053 181 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 AL157938.2-205ENST00000586290 891 ntTSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.75□□□□□ -1.65
HMGA1P17096 AP001160.4-201ENST00000596971 382 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 AC009120.7-201ENST00000623452 780 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 OR2L1P-202ENST00000641567 1023 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 AL359922.3-201ENST00000624779 1670 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 PROX1-205ENST00000498508 8498 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 OR56A4-202ENST00000641156 3768 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HMGA1P17096 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.75□□□□□ -1.65
HMGA1P17096 TNFAIP8-207ENST00000513374 1385 ntTSL 2 BASIC4.75□□□□□ -1.65
HMGA1P17096 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 SPHKAP-201ENST00000344657 6804 ntAPPRIS P3 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 SALL4P2-201ENST00000423288 2910 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.75□□□□□ -1.65
HMGA1P17096 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.75□□□□□ -1.65
HMGA1P17096 CPHL1P-201ENST00000461341 3407 ntBASIC4.75□□□□□ -1.65
HMGA1P17096 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms