Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 ZSCAN26-201ENST00000316606 2362 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.66□□□□□ -1.34
LIG3P49916 TDRD1-201ENST00000251864 4510 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 GDPD4-201ENST00000315938 2533 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 NOSTRIN-209ENST00000458381 2535 ntTSL 2 BASIC6.66□□□□□ -1.34
LIG3P49916 TCF4-284ENST00000637169 7553 ntTSL 5 BASIC6.66□□□□□ -1.34
LIG3P49916 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 PPIAP24-201ENST00000328558 471 ntBASIC6.66□□□□□ -1.34
LIG3P49916 RNA5SP188-201ENST00000362916 129 ntBASIC6.66□□□□□ -1.34
LIG3P49916 RNU6-619P-201ENST00000365146 108 ntBASIC6.66□□□□□ -1.34
LIG3P49916 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
LIG3P49916 RNU6-316P-201ENST00000391027 107 ntBASIC6.66□□□□□ -1.34
LIG3P49916 RNU6-1300P-201ENST00000391046 108 ntBASIC6.66□□□□□ -1.34
LIG3P49916 NCSTNP1-201ENST00000406229 144 ntBASIC6.66□□□□□ -1.34
LIG3P49916 OR2A2-201ENST00000408979 1051 ntAPPRIS P1 BASIC6.66□□□□□ -1.34
LIG3P49916 RN7SKP146-201ENST00000410242 334 ntBASIC6.66□□□□□ -1.34
LIG3P49916 RN7SKP108-201ENST00000411367 328 ntBASIC6.66□□□□□ -1.34
LIG3P49916 SMARCE1P1-201ENST00000417747 1186 ntBASIC6.66□□□□□ -1.34
LIG3P49916 FNDC3CP-201ENST00000420795 1155 ntBASIC6.66□□□□□ -1.34
LIG3P49916 NME1P1-201ENST00000420914 382 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC6.66□□□□□ -1.34
LIG3P49916 MRPS21P2-201ENST00000424704 264 ntBASIC6.66□□□□□ -1.34
LIG3P49916 Z93242.1-201ENST00000427102 353 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC007559.1-201ENST00000428736 355 ntBASIC6.66□□□□□ -1.34
LIG3P49916 CCNB1IP1P1-201ENST00000428976 839 ntBASIC6.66□□□□□ -1.34
LIG3P49916 LINC01884-201ENST00000433429 440 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 AC245452.2-201ENST00000435222 392 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC026167.1-201ENST00000435651 299 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 AL139161.1-201ENST00000443207 190 ntTSL 5 BASIC6.66□□□□□ -1.34
LIG3P49916 AC069542.1-201ENST00000445235 557 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 RPS18P1-201ENST00000447840 458 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC099670.1-201ENST00000455141 783 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC108751.4-201ENST00000462931 1001 ntTSL 2 BASIC6.66□□□□□ -1.34
LIG3P49916 AC044810.1-201ENST00000480271 711 ntBASIC6.66□□□□□ -1.34
LIG3P49916 NPM1P27-201ENST00000502784 830 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC138853.1-201ENST00000503549 823 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC092903.2-201ENST00000510244 427 ntTSL 5 BASIC6.66□□□□□ -1.34
LIG3P49916 AC022784.3-202ENST00000517816 826 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 IGHV3-57-201ENST00000520143 280 ntBASIC6.66□□□□□ -1.34
LIG3P49916 TBCA-209ENST00000522370 435 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 LINC01608-201ENST00000523557 544 ntTSL 4 BASIC6.66□□□□□ -1.34
LIG3P49916 AHI1-217ENST00000534469 680 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 AP003115.1-201ENST00000569849 463 ntBASIC6.66□□□□□ -1.34
LIG3P49916 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 AC011921.2-201ENST00000589465 152 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC010325.2-201ENST00000594114 260 ntTSL 3 BASIC6.66□□□□□ -1.34
LIG3P49916 SNORD96A-201ENST00000606577 79 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC068726.1-201ENST00000610993 341 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC013476.2-201ENST00000614456 459 ntBASIC6.66□□□□□ -1.34
LIG3P49916 Six3os1_4.1-201ENST00000615706 324 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AL356274.1-201ENST00000617064 410 ntBASIC6.66□□□□□ -1.34
LIG3P49916 MIR7854-201ENST00000620068 65 ntBASIC6.66□□□□□ -1.34
LIG3P49916 SEPT14P19-203ENST00000633205 211 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC244258.1-201ENST00000637553 1071 ntBASIC6.66□□□□□ -1.34
LIG3P49916 AC099654.13-201ENST00000639774 207 ntBASIC6.66□□□□□ -1.34
LIG3P49916 ESRRG-219ENST00000487276 3015 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 NDC80-201ENST00000261597 2172 ntAPPRIS P1 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 CACNB4-223ENST00000636380 1756 ntTSL 5 BASIC6.66□□□□□ -1.34
LIG3P49916 AC003973.2-201ENST00000596778 1394 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 AC010624.4-201ENST00000597606 1351 ntBASIC6.66□□□□□ -1.34
LIG3P49916 TAF7L-203ENST00000372907 2341 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 AC003973.3-201ENST00000624863 2822 ntBASIC6.66□□□□□ -1.34
LIG3P49916 ZNF525-201ENST00000467003 6107 ntTSL 4 BASIC6.66□□□□□ -1.34
LIG3P49916 AC004520.1-201ENST00000608362 1413 ntBASIC6.66□□□□□ -1.34
LIG3P49916 SLC4A4-202ENST00000340595 7640 ntTSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 AC217777.1-201ENST00000570034 1471 ntBASIC6.66□□□□□ -1.34
LIG3P49916 PROM1-201ENST00000447510 3977 ntAPPRIS P3 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 BRIP1-201ENST00000259008 6048 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 TMEM209-201ENST00000397622 3545 ntAPPRIS P2 TSL 1 (best) BASIC6.66□□□□□ -1.34
LIG3P49916 ZFY-202ENST00000383052 5113 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
LIG3P49916 EOGT-208ENST00000540764 1584 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIG3P49916 EVI2B-202ENST00000577894 1597 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
LIG3P49916 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIG3P49916 MAK-204ENST00000536370 3767 ntTSL 1 (best) BASIC6.65□□□□□ -1.34
LIG3P49916 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC6.65□□□□□ -1.34
LIG3P49916 C11orf54-206ENST00000528099 1862 ntAPPRIS P1 TSL 2 BASIC6.65□□□□□ -1.34
LIG3P49916 AMY2A-204ENST00000622339 1862 ntAPPRIS P1 TSL 5 BASIC6.65□□□□□ -1.34
LIG3P49916 OR1I1-201ENST00000209540 1242 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
LIG3P49916 OR10J6P-201ENST00000289731 930 ntBASIC6.65□□□□□ -1.34
LIG3P49916 SSMEM1-201ENST00000297819 1159 ntAPPRIS P1 TSL 1 (best) BASIC6.65□□□□□ -1.34
LIG3P49916 RNU6-660P-201ENST00000364566 109 ntBASIC6.65□□□□□ -1.34
LIG3P49916 GNG5P2-201ENST00000372054 207 ntBASIC6.65□□□□□ -1.34
LIG3P49916 PSMD10-206ENST00000372296 878 ntTSL 5 BASIC6.65□□□□□ -1.34
LIG3P49916 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC6.65□□□□□ -1.34
LIG3P49916 U3.52-201ENST00000384034 216 ntBASIC6.65□□□□□ -1.34
LIG3P49916 OR6C69P-201ENST00000394268 893 ntBASIC6.65□□□□□ -1.34
LIG3P49916 RANP6-201ENST00000413691 644 ntBASIC6.65□□□□□ -1.34
LIG3P49916 RPL21P108-201ENST00000413857 481 ntBASIC6.65□□□□□ -1.34
LIG3P49916 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 AC104651.1-201ENST00000427559 735 ntBASIC6.65□□□□□ -1.34
LIG3P49916 HNRNPA1P18-201ENST00000433537 927 ntBASIC6.65□□□□□ -1.34
LIG3P49916 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 MTND4P25-201ENST00000441039 533 ntBASIC6.65□□□□□ -1.34
LIG3P49916 GAPDHP33-201ENST00000443168 1013 ntBASIC6.65□□□□□ -1.34
LIG3P49916 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 COX6CP12-201ENST00000446748 202 ntBASIC6.65□□□□□ -1.34
LIG3P49916 PDCL3P4-201ENST00000489621 720 ntBASIC6.65□□□□□ -1.34
LIG3P49916 AC091868.2-201ENST00000506717 556 ntTSL 3 BASIC6.65□□□□□ -1.34
LIG3P49916 LINC02364-201ENST00000514802 687 ntTSL 2 BASIC6.65□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 100.1 ms