Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC4.72□□□□□ -1.65
SOX3P41225 OR6C3-202ENST00000641364 1341 ntAPPRIS P1 BASIC4.72□□□□□ -1.65
SOX3P41225 AC008079.2-201ENST00000623543 20396 ntBASIC4.71□□□□□ -1.65
SOX3P41225 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.71□□□□□ -1.65
SOX3P41225 VPS13D-213ENST00000613099 16245 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC4.71□□□□□ -1.66
SOX3P41225 RBMS1-203ENST00000409075 1550 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SOX3P41225 EEF1A1P36-201ENST00000427807 1351 ntBASIC4.71□□□□□ -1.66
SOX3P41225 MGP-201ENST00000228938 694 ntTSL 3 BASIC4.71□□□□□ -1.66
SOX3P41225 ATP6V1G3-201ENST00000281087 630 ntAPPRIS P1 TSL 5 BASIC4.71□□□□□ -1.66
SOX3P41225 ATP6V1G3-202ENST00000309309 678 ntTSL 5 BASIC4.71□□□□□ -1.66
SOX3P41225 OR4K13-201ENST00000315693 915 ntAPPRIS P1 BASIC4.71□□□□□ -1.66
SOX3P41225 CHMP1B2P-201ENST00000399581 597 ntBASIC4.71□□□□□ -1.66
SOX3P41225 AC016769.2-201ENST00000414815 475 ntBASIC4.71□□□□□ -1.66
SOX3P41225 GJA6P-201ENST00000415117 1042 ntBASIC4.71□□□□□ -1.66
SOX3P41225 DPP10-AS3-201ENST00000417844 665 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 GLUD1P9-201ENST00000420997 1173 ntBASIC4.71□□□□□ -1.66
SOX3P41225 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC4.71□□□□□ -1.66
SOX3P41225 AC023141.6-201ENST00000429418 337 ntBASIC4.71□□□□□ -1.66
SOX3P41225 ZNF736P1Y-201ENST00000440402 1276 ntBASIC4.71□□□□□ -1.66
SOX3P41225 XKRY2-201ENST00000442362 1093 ntBASIC4.71□□□□□ -1.66
SOX3P41225 KNOP1P3-201ENST00000446933 426 ntBASIC4.71□□□□□ -1.66
SOX3P41225 BTF3P6-201ENST00000448054 499 ntBASIC4.71□□□□□ -1.66
SOX3P41225 VN1R48P-201ENST00000448149 1036 ntBASIC4.71□□□□□ -1.66
SOX3P41225 OTX2P1-201ENST00000450956 354 ntBASIC4.71□□□□□ -1.66
SOX3P41225 RPL7P61-201ENST00000451721 751 ntBASIC4.71□□□□□ -1.66
SOX3P41225 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC4.71□□□□□ -1.66
SOX3P41225 MTND6P32-201ENST00000457611 483 ntBASIC4.71□□□□□ -1.66
SOX3P41225 snoU13.20-201ENST00000459180 104 ntBASIC4.71□□□□□ -1.66
SOX3P41225 RPS4XP12-201ENST00000461747 709 ntBASIC4.71□□□□□ -1.66
SOX3P41225 AC084871.1-201ENST00000508020 628 ntTSL 3 BASIC4.71□□□□□ -1.66
SOX3P41225 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC4.71□□□□□ -1.66
SOX3P41225 AC073023.1-201ENST00000522896 773 ntTSL 5 BASIC4.71□□□□□ -1.66
SOX3P41225 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC4.71□□□□□ -1.66
SOX3P41225 AP001804.2-201ENST00000533932 910 ntBASIC4.71□□□□□ -1.66
SOX3P41225 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.71□□□□□ -1.66
SOX3P41225 SNHG1-218ENST00000541615 748 ntTSL 5 BASIC4.71□□□□□ -1.66
SOX3P41225 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 CR383656.14-201ENST00000551951 406 ntBASIC4.71□□□□□ -1.66
SOX3P41225 CKS1BP1-201ENST00000555221 240 ntBASIC4.71□□□□□ -1.66
SOX3P41225 AL118556.1-201ENST00000555257 502 ntTSL 2 BASIC4.71□□□□□ -1.66
SOX3P41225 MIR4691-201ENST00000583764 85 ntBASIC4.71□□□□□ -1.66
SOX3P41225 AP005432.2-201ENST00000608162 586 ntBASIC4.71□□□□□ -1.66
SOX3P41225 MIR6730-201ENST00000622213 67 ntBASIC4.71□□□□□ -1.66
SOX3P41225 AC015871.5-202ENST00000623252 701 ntBASIC4.71□□□□□ -1.66
SOX3P41225 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.71□□□□□ -1.66
SOX3P41225 AP001002.1-201ENST00000625148 1513 ntBASIC4.71□□□□□ -1.66
SOX3P41225 HHLA2-210ENST00000491820 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 LIMA1-214ENST00000552783 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 AC126323.6-202ENST00000568092 3511 ntBASIC4.71□□□□□ -1.66
SOX3P41225 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.71□□□□□ -1.66
SOX3P41225 ZNF652P1-201ENST00000442420 1309 ntBASIC4.71□□□□□ -1.66
SOX3P41225 SCRG1-201ENST00000296506 4420 ntAPPRIS P1 TSL 1 (best) BASIC4.71□□□□□ -1.66
SOX3P41225 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 ATP13A4-203ENST00000392443 4016 ntTSL 5 BASIC4.7□□□□□ -1.66
SOX3P41225 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 OTC-201ENST00000039007 1585 ntAPPRIS P1 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.7□□□□□ -1.66
SOX3P41225 AC131971.1-201ENST00000332881 1482 ntBASIC4.7□□□□□ -1.66
SOX3P41225 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 MED12L-201ENST00000273432 6401 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 AC010132.2-201ENST00000295493 1043 ntBASIC4.7□□□□□ -1.66
SOX3P41225 RN7SKP113-201ENST00000363891 295 ntBASIC4.7□□□□□ -1.66
SOX3P41225 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 AL356057.1-202ENST00000402263 756 ntBASIC4.7□□□□□ -1.66
SOX3P41225 RN7SKP125-201ENST00000410481 302 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC004594.1-217ENST00000422260 325 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 MTND4P24-201ENST00000424002 397 ntBASIC4.7□□□□□ -1.66
SOX3P41225 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 LINC00348-201ENST00000428761 948 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 RPS27P18-201ENST00000431701 247 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AL606490.7-201ENST00000433136 191 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC007563.3-201ENST00000433233 371 ntBASIC4.7□□□□□ -1.66
SOX3P41225 RHOT1P3-201ENST00000436571 331 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 RPL35AP21-201ENST00000437667 333 ntBASIC4.7□□□□□ -1.66
SOX3P41225 CLEC5A-203ENST00000439991 501 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 RPL34P20-201ENST00000442771 351 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 MTND2P30-201ENST00000456663 382 ntBASIC4.7□□□□□ -1.66
SOX3P41225 CREM-220ENST00000463314 964 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 RN7SL443P-201ENST00000464331 290 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC026316.2-201ENST00000473110 263 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 SH3GLB1-202ENST00000482504 1199 ntTSL 1 (best) BASIC4.7□□□□□ -1.66
SOX3P41225 GNPDA2-202ENST00000507534 1050 ntTSL 2 BASIC4.7□□□□□ -1.66
SOX3P41225 AC106806.2-201ENST00000509365 500 ntBASIC4.7□□□□□ -1.66
SOX3P41225 SNHG27-203ENST00000514222 680 ntTSL 3 BASIC4.7□□□□□ -1.66
SOX3P41225 AC016550.3-201ENST00000515706 767 ntBASIC4.7□□□□□ -1.66
SOX3P41225 AC132219.1-201ENST00000524337 478 ntTSL 5 BASIC4.7□□□□□ -1.66
SOX3P41225 AP000676.2-201ENST00000529711 301 ntBASIC4.7□□□□□ -1.66
Retrieved 100 of 98,524 protein–RNA pairs in 77.4 ms