Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MYL12BP2-201ENST00000503948 512 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 EGFLAM-AS3-201ENST00000505267 549 ntTSL 5 BASIC6.23□□□□□ -1.41
HOXC9P31274 AC138956.1-201ENST00000508187 504 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXC9P31274 AC011595.3-201ENST00000546699 632 ntTSL 3 BASIC6.23□□□□□ -1.41
HOXC9P31274 AL049830.4-201ENST00000555149 351 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 AC069366.1-201ENST00000583159 838 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC6.23□□□□□ -1.41
HOXC9P31274 MIR6716-201ENST00000613413 80 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 AC068724.3-201ENST00000625906 87 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC6.23□□□□□ -1.41
HOXC9P31274 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.23□□□□□ -1.41
HOXC9P31274 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC6.23□□□□□ -1.41
HOXC9P31274 DTNA-227ENST00000597599 1869 ntAPPRIS ALT2 TSL 2 BASIC6.23□□□□□ -1.41
HOXC9P31274 ADAM24P-201ENST00000398655 2101 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 SNX18P3-202ENST00000565670 1750 ntBASIC6.23□□□□□ -1.41
HOXC9P31274 R3HDM1-201ENST00000264160 4648 ntAPPRIS P3 TSL 1 (best) BASIC6.23□□□□□ -1.41
HOXC9P31274 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC6.23□□□□□ -1.41
HOXC9P31274 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
HOXC9P31274 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXC9P31274 SYCP1-210ENST00000618516 3109 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 AC011287.1-206ENST00000638774 2642 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXC9P31274 NCOA3-203ENST00000372004 7939 ntAPPRIS ALT2 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 SULF1-204ENST00000458141 5551 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 RPL26-201ENST00000293842 524 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC6.22□□□□□ -1.41
HOXC9P31274 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC6.22□□□□□ -1.41
HOXC9P31274 AL136231.1-201ENST00000429407 730 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC6.22□□□□□ -1.41
HOXC9P31274 SCARNA10-201ENST00000459255 330 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 AC090142.1-201ENST00000465776 462 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 APOA2-207ENST00000470459 416 ntTSL 5 BASIC6.22□□□□□ -1.41
HOXC9P31274 AP001330.2-201ENST00000523121 979 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC9P31274 TEX12-202ENST00000530752 787 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC9P31274 AC006349.1-201ENST00000555526 235 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC6.22□□□□□ -1.41
HOXC9P31274 AC103792.1-201ENST00000603591 919 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 GMCL1P2-201ENST00000605230 823 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 AC010857.1-201ENST00000606398 594 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 SNORA35B-201ENST00000607417 129 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 RNA5SP439-201ENST00000617595 124 ntBASIC6.22□□□□□ -1.41
HOXC9P31274 TRIM69-201ENST00000329464 1901 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 LINC01239-202ENST00000436786 2347 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC9P31274 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC6.22□□□□□ -1.41
HOXC9P31274 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
HOXC9P31274 SCGB2A2-202ENST00000525380 1305 ntTSL 2 BASIC6.22□□□□□ -1.41
HOXC9P31274 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.22□□□□□ -1.41
HOXC9P31274 UGT2B26P-201ENST00000508672 1613 ntBASIC6.21□□□□□ -1.41
HOXC9P31274 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC6.21□□□□□ -1.41
HOXC9P31274 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC6.21□□□□□ -1.41
HOXC9P31274 RASA1-203ENST00000506290 3009 ntAPPRIS ALT2 TSL 2 BASIC6.21□□□□□ -1.41
HOXC9P31274 ZNF468-203ENST00000595646 4407 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
HOXC9P31274 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.41
HOXC9P31274 LINC00919-201ENST00000561513 1658 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC9P31274 DNTTIP2-202ENST00000436063 5897 ntAPPRIS P1 TSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC9P31274 OR6C65-201ENST00000379665 1076 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HOXC9P31274 MTND3P20-201ENST00000407663 186 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 AL356387.2-201ENST00000422272 243 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 RGS17P1-201ENST00000423358 553 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 AL122010.1-201ENST00000429293 720 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC9P31274 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC9P31274 AC021660.1-201ENST00000465006 554 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC6.21□□□□□ -1.42
HOXC9P31274 RPL21P126-201ENST00000470049 478 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 AC025164.1-201ENST00000496249 478 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 MSMO1-203ENST00000504317 1026 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC9P31274 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC9P31274 AC091819.2-201ENST00000522292 490 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC9P31274 AP001775.2-201ENST00000531710 334 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC9P31274 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC9P31274 MIR3138-201ENST00000585238 82 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC6.21□□□□□ -1.42
HOXC9P31274 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC6.21□□□□□ -1.42
HOXC9P31274 AC090948.1-201ENST00000607464 549 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 AC018690.1-201ENST00000608144 626 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 CFTRP2-201ENST00000634304 199 ntBASIC6.21□□□□□ -1.42
HOXC9P31274 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC6.21□□□□□ -1.42
HOXC9P31274 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC6.21□□□□□ -1.42
HOXC9P31274 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC6.21□□□□□ -1.42
HOXC9P31274 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC6.21□□□□□ -1.42
HOXC9P31274 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC6.2□□□□□ -1.42
HOXC9P31274 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.2□□□□□ -1.42
HOXC9P31274 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC9P31274 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 LRRC39-202ENST00000370137 1396 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.2□□□□□ -1.42
HOXC9P31274 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 RNA5SP515-201ENST00000364570 118 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 TXN-201ENST00000374515 635 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
HOXC9P31274 OR1F12-201ENST00000402365 945 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 AL354766.1-201ENST00000423396 542 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 AL512641.1-201ENST00000427232 548 ntTSL 3 BASIC6.2□□□□□ -1.42
HOXC9P31274 NDUFA5P1-201ENST00000433858 341 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 RPL35AP21-201ENST00000437667 333 ntBASIC6.2□□□□□ -1.42
HOXC9P31274 CYCSP24-201ENST00000445119 316 ntBASIC6.2□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms