Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
SDC1P18827 RNU6-249P-201ENST00000363016 102 ntBASIC4.58□□□□□ -1.68
SDC1P18827 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.58□□□□□ -1.68
SDC1P18827 RNF212B-201ENST00000399905 1071 ntTSL 5 BASIC4.58□□□□□ -1.68
SDC1P18827 BCL11A-205ENST00000409351 756 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 PPP3R1-203ENST00000409752 851 ntTSL 3 BASIC4.58□□□□□ -1.68
SDC1P18827 LINC00308-201ENST00000419431 727 ntTSL 5 BASIC4.58□□□□□ -1.68
SDC1P18827 NPM1P26-201ENST00000426339 738 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AL158835.2-201ENST00000430970 300 ntTSL 2 BASIC4.58□□□□□ -1.68
SDC1P18827 AC241644.1-201ENST00000431525 446 ntTSL 3 BASIC4.58□□□□□ -1.68
SDC1P18827 RPS27P18-201ENST00000431701 247 ntBASIC4.58□□□□□ -1.68
SDC1P18827 RPL37AP8-201ENST00000494116 276 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC140172.1-201ENST00000502928 141 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC116424.1-203ENST00000513940 671 ntTSL 3 BASIC4.58□□□□□ -1.68
SDC1P18827 RNU6-319P-201ENST00000516025 108 ntBASIC4.58□□□□□ -1.68
SDC1P18827 RNA5SP92-201ENST00000516437 110 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AP002981.1-201ENST00000517692 975 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC4.58□□□□□ -1.68
SDC1P18827 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.58□□□□□ -1.68
SDC1P18827 AC115837.2-201ENST00000522127 677 ntTSL 3 BASIC4.58□□□□□ -1.68
SDC1P18827 AP000859.1-201ENST00000525536 307 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.58□□□□□ -1.68
SDC1P18827 AC008147.3-201ENST00000548666 354 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC4.58□□□□□ -1.68
SDC1P18827 AC011453.2-201ENST00000603737 729 ntBASIC4.58□□□□□ -1.68
SDC1P18827 SUMO2P15-201ENST00000604285 278 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC107308.1-201ENST00000615897 301 ntBASIC4.58□□□□□ -1.68
SDC1P18827 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.58□□□□□ -1.68
SDC1P18827 AC134980.1-203ENST00000640541 570 ntTSL 4 BASIC4.58□□□□□ -1.68
SDC1P18827 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 THAP6-202ENST00000380837 3423 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.58□□□□□ -1.68
SDC1P18827 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 PPP2R2A-201ENST00000315985 1878 ntAPPRIS ALT1 TSL 2 BASIC4.58□□□□□ -1.68
SDC1P18827 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
SDC1P18827 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
SDC1P18827 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
SDC1P18827 CSPP1-203ENST00000519668 3715 ntAPPRIS ALT2 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 AL356317.1-201ENST00000396110 1436 ntBASIC4.57□□□□□ -1.68
SDC1P18827 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 AL121950.1-201ENST00000624993 2077 ntBASIC4.57□□□□□ -1.68
SDC1P18827 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 EIF1B-201ENST00000232905 1010 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.57□□□□□ -1.68
SDC1P18827 MIR7-1-201ENST00000384871 110 ntBASIC4.57□□□□□ -1.68
SDC1P18827 NPM1P10-201ENST00000398310 865 ntBASIC4.57□□□□□ -1.68
SDC1P18827 RNU6ATAC7P-201ENST00000408111 127 ntBASIC4.57□□□□□ -1.68
SDC1P18827 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 LINC00993-201ENST00000420453 540 ntBASIC4.57□□□□□ -1.68
SDC1P18827 AL355433.1-201ENST00000422804 300 ntBASIC4.57□□□□□ -1.68
SDC1P18827 RPL7P57-201ENST00000423238 740 ntBASIC4.57□□□□□ -1.68
SDC1P18827 AL645608.4-201ENST00000423619 154 ntBASIC4.57□□□□□ -1.68
SDC1P18827 AC104170.2-201ENST00000424246 678 ntTSL 3 BASIC4.57□□□□□ -1.68
SDC1P18827 MIR99AHG-205ENST00000435697 716 ntTSL 2 BASIC4.57□□□□□ -1.68
SDC1P18827 AL138787.1-202ENST00000437804 898 ntBASIC4.57□□□□□ -1.68
SDC1P18827 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC4.57□□□□□ -1.68
SDC1P18827 AC005532.2-201ENST00000467154 373 ntBASIC4.57□□□□□ -1.68
SDC1P18827 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC4.57□□□□□ -1.68
SDC1P18827 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.57□□□□□ -1.68
SDC1P18827 AC008953.1-201ENST00000497334 318 ntBASIC4.57□□□□□ -1.68
SDC1P18827 AC025470.2-201ENST00000506106 897 ntTSL 2 BASIC4.57□□□□□ -1.68
SDC1P18827 RFPL4AP5-201ENST00000514977 504 ntBASIC4.57□□□□□ -1.68
SDC1P18827 AL671862.1-201ENST00000515851 349 ntBASIC4.57□□□□□ -1.68
SDC1P18827 RN7SKP147-201ENST00000517154 244 ntBASIC4.57□□□□□ -1.68
SDC1P18827 AC013701.1-201ENST00000522657 465 ntBASIC4.57□□□□□ -1.68
SDC1P18827 AP003472.2-201ENST00000523554 639 ntTSL 3 BASIC4.57□□□□□ -1.68
SDC1P18827 LINC02156-201ENST00000552320 483 ntTSL 2 BASIC4.57□□□□□ -1.68
SDC1P18827 PSMG2-204ENST00000585331 983 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC4.57□□□□□ -1.68
SDC1P18827 AC004160.1-202ENST00000599917 578 ntTSL 5 BASIC4.57□□□□□ -1.68
SDC1P18827 CR381572.2-201ENST00000624852 397 ntBASIC4.57□□□□□ -1.68
SDC1P18827 LDHA-225ENST00000625635 141 ntTSL 5 BASIC4.57□□□□□ -1.68
SDC1P18827 PCDH15-211ENST00000395440 3177 ntTSL 5 BASIC4.57□□□□□ -1.68
SDC1P18827 ZFX-203ENST00000379177 7558 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC4.57□□□□□ -1.68
SDC1P18827 AL672167.1-203ENST00000641299 2975 ntBASIC4.57□□□□□ -1.68
SDC1P18827 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 RLIM-201ENST00000332687 8317 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
SDC1P18827 ARHGAP42P3-201ENST00000443989 2508 ntBASIC4.56□□□□□ -1.68
SDC1P18827 ALB-214ENST00000509063 1911 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.56□□□□□ -1.68
SDC1P18827 ROBO2-213ENST00000614793 7662 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 TCF4-281ENST00000636822 7640 ntTSL 5 BASIC4.56□□□□□ -1.68
SDC1P18827 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
SDC1P18827 EOGT-209ENST00000540955 1332 ntTSL 2 BASIC4.56□□□□□ -1.68
SDC1P18827 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.56□□□□□ -1.68
SDC1P18827 RNU6-152P-201ENST00000384037 107 ntBASIC4.56□□□□□ -1.68
SDC1P18827 RPS26P2-201ENST00000440331 348 ntBASIC4.56□□□□□ -1.68
SDC1P18827 EEF1B2P5-201ENST00000444820 548 ntBASIC4.56□□□□□ -1.68
SDC1P18827 PPIAP20-201ENST00000449839 135 ntBASIC4.56□□□□□ -1.68
SDC1P18827 MTND3P4-201ENST00000453537 303 ntBASIC4.56□□□□□ -1.68
SDC1P18827 RN7SL727P-201ENST00000482164 296 ntBASIC4.56□□□□□ -1.68
SDC1P18827 PLSCR5-202ENST00000482567 1018 ntTSL 1 (best) BASIC4.56□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 155.9 ms