Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 PTK2-206ENST00000517712 3351 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 EEF1A1P33-201ENST00000554413 1362 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RASSF6-204ENST00000395777 2735 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 CCNB3-202ENST00000348603 1201 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RN7SKP95-201ENST00000362860 303 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RNU6-666P-201ENST00000363499 107 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RN7SKP224-201ENST00000364140 325 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 CCNB3-203ENST00000376038 1201 ntTSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RNU6-178P-201ENST00000384631 104 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AL356967.1-201ENST00000406305 431 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 SETP15-201ENST00000412724 337 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 MTATP6P19-201ENST00000413797 659 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AL590623.1-201ENST00000427864 105 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 HSPD1P12-201ENST00000429127 1069 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC008072.1-201ENST00000434254 824 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AL513343.1-201ENST00000451818 792 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RPL12P39-201ENST00000455456 496 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 TPRKBP1-201ENST00000456243 481 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 PSAT1P4-201ENST00000466500 526 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 CMAHP-205ENST00000471416 1118 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RPL21P6-201ENST00000479171 504 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 HMGN2P25-201ENST00000486956 268 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RPS17P5-201ENST00000498293 408 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 OR8Q1P-201ENST00000526467 655 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC130404.1-201ENST00000539362 739 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC079866.2-201ENST00000541870 515 ntTSL 3 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC084824.2-201ENST00000548906 345 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC020612.3-201ENST00000550644 570 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 LINC02157-201ENST00000558885 447 ntTSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC092140.1-201ENST00000563090 549 ntTSL 3 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC009117.1-201ENST00000563948 554 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 BGLT3-201ENST00000564523 994 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC074276.2-201ENST00000619891 348 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 LINC00216-201ENST00000623548 1126 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 AC073869.8-201ENST00000641806 335 ntBASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 LINS1-214ENST00000561308 1612 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
PCDHGA1Q9Y5H4 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 MAPK10-263ENST00000641052 4307 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 TCEAL7-201ENST00000332431 1177 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 SNORA27.3-201ENST00000364937 134 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 Z97832.1-201ENST00000402490 328 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 RNU2-50P-201ENST00000410494 143 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AL031674.1-202ENST00000413070 465 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 CHEK2P3-201ENST00000416118 248 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AL158827.1-201ENST00000416300 391 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 HSPE1P16-201ENST00000426640 348 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AL031428.1-201ENST00000427154 666 ntTSL 2 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AL133260.2-201ENST00000445833 396 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 TAAR4P-201ENST00000454843 1039 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 ADGRL3-AS1-202ENST00000504135 542 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 LINC02265-201ENST00000510551 957 ntTSL 2 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 RNU6-889P-201ENST00000517189 103 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC120193.1-201ENST00000518988 741 ntTSL 2 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC021006.3-201ENST00000530771 192 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC012414.2-201ENST00000559474 187 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 TM6SF1-207ENST00000565774 1020 ntTSL 1 (best) BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC046158.2-201ENST00000568764 707 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 SRD5A3-AS1-209ENST00000598819 552 ntTSL 5 BASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AC015802.5-201ENST00000607478 399 ntBASIC5.06□□□□□ -1.6
PCDHGA1Q9Y5H4 AL021368.1-201ENST00000607490 540 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 100.4 ms