Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 TTC39CP1-201ENST00000512513 755 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RNA5SP518-201ENST00000515957 119 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RNA5SP75-201ENST00000516841 111 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AC013546.1-201ENST00000523232 564 ntTSL 4 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 RN7SL657P-201ENST00000582431 293 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AL356056.3-201ENST00000605984 551 ntTSL 3 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 AL121612.2-201ENST00000612261 482 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 KLHL32-207ENST00000620278 2642 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 PLCE1-AS2-213ENST00000620469 432 ntTSL 5 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 CDC73-204ENST00000635846 3987 ntTSL 5 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 OR2L1P-202ENST00000641567 1023 ntBASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 NSD2-208ENST00000420906 5109 ntTSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 SCRN3-201ENST00000272732 3037 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 MUC3A-203ENST00000483366 9944 ntAPPRIS ALT2 TSL 5 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 LINC00184-201ENST00000429269 2270 ntTSL 2 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 TIA1-201ENST00000282574 3823 ntTSL 5 BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 DIEXF-202ENST00000491415 8446 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 OLFML1-201ENST00000329293 2792 ntAPPRIS P1 TSL 1 (best) BASIC9.35□□□□□ -0.91
TRIM35Q9UPQ4 COBLL1-203ENST00000392717 9523 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 C8orf4-201ENST00000315792 1854 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AC096564.2-201ENST00000512428 3147 ntTSL 5 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 MRPS17P1-201ENST00000596009 3130 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 KIAA1143-201ENST00000296121 5122 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 CPEB4-201ENST00000265085 9483 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AL354733.2-209ENST00000589233 1434 ntTSL 2 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 NOVA1-204ENST00000465357 3573 ntAPPRIS ALT1 TSL 3 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 LMO7-207ENST00000465261 5580 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 GNG3-201ENST00000294117 882 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 GIP-201ENST00000357424 716 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RNA5SP114-201ENST00000363780 113 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 S100A7-202ENST00000368723 479 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 MIR152-201ENST00000385212 87 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RNU6-1300P-201ENST00000391046 108 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RN7SKP254-201ENST00000410685 310 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AL132796.1-201ENST00000421617 479 ntTSL 3 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RPL31P12-201ENST00000422587 358 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 U51244.1-201ENST00000423120 374 ntTSL 3 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 PIGPP3-201ENST00000425307 415 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 SKP1P3-201ENST00000429280 487 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 PRPF38AP2-201ENST00000438179 851 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 DNAJC19P5-201ENST00000443295 316 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RPL17P49-201ENST00000443728 411 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 HSFY6P-201ENST00000445573 403 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RANP1-206ENST00000455094 651 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RPS23-208ENST00000512493 443 ntTSL 3 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 LINC01950-202ENST00000513273 572 ntTSL 2 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 BFSP2-AS1-201ENST00000515542 894 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RNU6-182P-201ENST00000516970 105 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AC087854.1-201ENST00000519706 414 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 MIR4800-201ENST00000537353 80 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 NMNAT1P1-201ENST00000554095 876 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 ASXL1-208ENST00000555343 1034 ntTSL 5 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AP001122.1-201ENST00000572256 541 ntTSL 4 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RN7SL131P-201ENST00000579043 256 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AC113195.1-201ENST00000579952 141 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 COX6CP16-201ENST00000603667 216 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AC018889.1-201ENST00000605372 397 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 LINC02098-201ENST00000608492 475 ntTSL 3 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 Z99755.2-201ENST00000610215 364 ntTSL 3 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 DARS-AS1-225ENST00000615163 824 ntTSL 5 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AL049641.1-201ENST00000441055 1948 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 AL121949.2-201ENST00000403446 1548 ntBASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 STAMBP-201ENST00000339566 6277 ntAPPRIS P1 TSL 5 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 OR4F17-203ENST00000618231 2586 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 RASGEF1B-203ENST00000436139 6323 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 ZNF451-204ENST00000370708 9478 ntTSL 2 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 IFIT2-202ENST00000611722 3038 ntAPPRIS ALT2 TSL 5 BASIC9.34□□□□□ -0.91
TRIM35Q9UPQ4 SPATA31C2-201ENST00000324915 3777 ntBASIC9.34□□□□□ -0.92
TRIM35Q9UPQ4 LPIN1-202ENST00000396097 5690 ntTSL 5 BASIC9.34□□□□□ -0.92
TRIM35Q9UPQ4 ZNF841-202ENST00000426391 3620 ntTSL 2 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 AMOT-202ENST00000371958 2462 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 RIPOR2-206ENST00000538035 5389 ntTSL 2 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 GPR1-AS-201ENST00000623040 3708 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 ACTR3BP2-202ENST00000623630 1338 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 DPPA4-201ENST00000335658 2817 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 OR6J1-201ENST00000540461 4165 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 UBE4B-202ENST00000343090 5267 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 TRDN-206ENST00000628709 1661 ntAPPRIS ALT2 TSL 1 (best) BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 C14orf37-201ENST00000267485 6495 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 AL512646.1-201ENST00000269395 1077 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 OR11H13P-201ENST00000359695 979 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 Y_RNA.100-201ENST00000363141 102 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 OR51A2-201ENST00000380371 942 ntAPPRIS P1 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 RNU6-187P-201ENST00000384139 106 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 MIR217-201ENST00000384817 110 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 MIR138-2-201ENST00000384916 84 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 AP004243.1-202ENST00000398983 969 ntTSL 5 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 RSPH14-202ENST00000406876 519 ntTSL 3 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 AL161742.1-201ENST00000418154 584 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 AC062016.2-201ENST00000420950 676 ntBASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 FRMPD4-AS1-201ENST00000425057 285 ntTSL 3 BASIC9.33□□□□□ -0.92
TRIM35Q9UPQ4 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC9.33□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms