Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 LRRC37BP1-201ENST00000398851 714 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AL109941.1-201ENST00000401925 229 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AL021331.1-201ENST00000402817 582 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC233289.1-201ENST00000403700 508 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC007738.1-201ENST00000413892 348 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 TRIM60P17-201ENST00000415181 719 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC012519.1-201ENST00000424588 610 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 PSMD10P3-201ENST00000437000 448 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 AL450263.2-201ENST00000439400 589 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 FAM237A-201ENST00000441223 773 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 AP000146.1-203ENST00000444178 309 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 AL137845.2-201ENST00000444292 988 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 TRY2P-201ENST00000448860 689 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AL023584.2-201ENST00000454411 444 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 RPS17P2-201ENST00000461663 408 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 CFAP44-AS1-202ENST00000498480 686 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC140172.1-201ENST00000502928 141 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AK4P6-201ENST00000505168 528 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC093763.1-201ENST00000512464 699 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 OR5AZ1P-201ENST00000527448 943 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 TVP23CP2-201ENST00000571473 623 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 MIR4646-201ENST00000580775 63 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 EIF1P5-201ENST00000585002 234 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC012213.4-201ENST00000606457 354 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC004241.3-201ENST00000611728 517 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 Metazoa_SRP.181-201ENST00000616636 288 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC015722.2-201ENST00000622210 551 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC002384.2-201ENST00000636036 790 ntTSL 3 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 ZNRD1ASP-221ENST00000637794 1074 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 SCN1A-218ENST00000640036 8131 ntAPPRIS ALT1 TSL 5 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 BRIP1-202ENST00000577598 3969 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 TXNDC8-201ENST00000374507 1787 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC4.95□□□□□ -1.62
VPS35Q96QK1 AC005332.5-201ENST00000591222 2919 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 ECM1P2-201ENST00000503354 1577 ntBASIC4.95□□□□□ -1.62
VPS35Q96QK1 POU2F1-212ENST00000541643 13937 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
VPS35Q96QK1 FGD4-210ENST00000525053 2925 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 PSG1-204ENST00000436291 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 OR2L5-201ENST00000355281 2429 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 EFCAB3-201ENST00000305286 1542 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 RN7SKP104-201ENST00000362605 328 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 SNORA74A-201ENST00000364089 198 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 SNORA70.10-201ENST00000384515 134 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 VN1R54P-201ENST00000435210 1049 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AL592494.1-201ENST00000437523 309 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 RPL7L1P1-201ENST00000448259 785 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 EIF4EBP2P1-201ENST00000450009 343 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AL691482.1-201ENST00000453255 87 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC096543.1-201ENST00000455038 823 ntTSL 3 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 RN7SL319P-201ENST00000480656 221 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC073073.1-201ENST00000493920 463 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 HAPLN1-206ENST00000514416 1145 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC106791.1-201ENST00000514616 827 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC084759.1-201ENST00000561168 290 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC027281.1-201ENST00000574178 758 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC006504.5-202ENST00000586784 656 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 LINC02112-204ENST00000606222 429 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 AL021707.7-201ENST00000607991 416 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AL135786.2-201ENST00000608422 615 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 BX005214.3-202ENST00000619809 325 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 AP000648.2-201ENST00000624182 404 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 BBX-203ENST00000402543 3980 ntTSL 5 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 PSD3-201ENST00000286485 6665 ntAPPRIS P3 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 ZNF207-203ENST00000394670 13781 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 CD96-203ENST00000438817 1565 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC4.94□□□□□ -1.62
VPS35Q96QK1 AC027228.2-201ENST00000567141 2154 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 LINC01355-201ENST00000566551 5444 ntBASIC4.94□□□□□ -1.62
VPS35Q96QK1 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC4.94□□□□□ -1.62
VPS35Q96QK1 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 MED23-203ENST00000368058 4576 ntTSL 5 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 FMN1-202ENST00000334528 12355 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
VPS35Q96QK1 RNA5SP123-201ENST00000363244 119 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC240504.1-201ENST00000395709 845 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 AL645733.1-201ENST00000402250 217 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 AL359643.1-201ENST00000404109 423 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 AC068483.1-201ENST00000413403 660 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.93□□□□□ -1.62
VPS35Q96QK1 AL691447.1-201ENST00000419456 387 ntBASIC4.93□□□□□ -1.62
VPS35Q96QK1 RLIMP2-201ENST00000427891 1563 ntBASIC4.93□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 120.1 ms