Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 WDR63-203ENST00000370596 2905 ntAPPRIS ALT2 TSL 5 BASIC5.04□□□□□ -1.6
VPS39Q96JC1 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS39Q96JC1 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC5.04□□□□□ -1.6
VPS39Q96JC1 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.6
VPS39Q96JC1 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC5.04□□□□□ -1.6
VPS39Q96JC1 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC5.04□□□□□ -1.6
VPS39Q96JC1 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 PANDAR-201ENST00000629595 1506 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 GABRA2-211ENST00000514090 3401 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 DDR2-202ENST00000367922 10160 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS39Q96JC1 PIGN-245ENST00000640252 7924 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS39Q96JC1 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AMELX-201ENST00000348912 737 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 RPL35AP24-201ENST00000413846 330 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 OR13Z1P-201ENST00000416141 834 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 HMGB3P9-201ENST00000441799 583 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 LINC01704-202ENST00000442358 649 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AL691482.1-201ENST00000453255 87 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 SSR3-206ENST00000476217 807 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 CFHR2-203ENST00000476712 1020 ntAPPRIS ALT2 TSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS39Q96JC1 NIP7P2-201ENST00000485801 544 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 LINC01192-206ENST00000489012 818 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC016074.1-201ENST00000518339 636 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC130650.1-201ENST00000570581 415 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AJ003147.1-201ENST00000576762 454 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 MIR4472-2-201ENST00000582069 67 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 SP2-AS1-204ENST00000585280 405 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC022154.1-203ENST00000594850 493 ntTSL 3 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 MIR6768-201ENST00000610734 72 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 RNF123-214ENST00000629802 207 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC074387.1-201ENST00000632044 823 ntTSL 2 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC011493.1-201ENST00000596753 1632 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 AC007996.1-201ENST00000620414 2821 ntBASIC5.03□□□□□ -1.6
VPS39Q96JC1 ART3-203ENST00000355810 1561 ntAPPRIS ALT2 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS39Q96JC1 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC5.03□□□□□ -1.6
VPS39Q96JC1 LINC01192-202ENST00000470546 1519 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC068446.1-201ENST00000556425 1549 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 DCDC1-211ENST00000597505 5352 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 POPDC3-201ENST00000254765 1345 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 MYO16-201ENST00000251041 3492 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 GYS2-201ENST00000261195 3132 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 STAG2-204ENST00000371157 5991 ntAPPRIS P3 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 SNORA17.1-201ENST00000362945 126 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 RNU6-670P-201ENST00000364312 104 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 LRRC37BP1-201ENST00000398851 714 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 SNORA77-201ENST00000408716 125 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 NPM1P4-201ENST00000414095 812 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 SLC35E1P1-201ENST00000419313 864 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 RPA2P2-201ENST00000419698 796 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 OR2AH1P-201ENST00000425717 928 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 LINC01400-201ENST00000426358 947 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AF127577.2-201ENST00000436429 824 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 ARL5AP3-201ENST00000439327 386 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 RPS29P9-201ENST00000440360 171 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 AL450023.3-201ENST00000440592 271 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AL121584.1-201ENST00000453972 519 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 RPS17P2-201ENST00000461663 408 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 PGAM1P13-201ENST00000507497 754 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 ERVH-1-201ENST00000507666 639 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 HMGB3P16-201ENST00000508037 287 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 PGBD4P4-201ENST00000509673 613 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC027308.1-201ENST00000517993 110 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 NPM1P6-201ENST00000521088 871 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 IGKV2-18-201ENST00000522607 343 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 OR4A46P-201ENST00000527255 933 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 MS4A6A-210ENST00000529054 1160 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC073525.1-201ENST00000549762 543 ntTSL 3 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 RPLP0-225ENST00000552292 720 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.02□□□□□ -1.61
VPS39Q96JC1 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC011468.1-201ENST00000569091 675 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
VPS39Q96JC1 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC5.02□□□□□ -1.61
VPS39Q96JC1 AC068020.1-201ENST00000594215 661 ntBASIC5.02□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms