Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC010245.2-201ENST00000606908 1167 ntBASIC5.16□□□□□ -1.58
VMP1Q96GC9 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 AC109309.2-201ENST00000612597 332 ntBASIC5.16□□□□□ -1.58
VMP1Q96GC9 AL118522.2-201ENST00000616045 615 ntBASIC5.16□□□□□ -1.58
VMP1Q96GC9 AC091932.2-201ENST00000623014 291 ntBASIC5.16□□□□□ -1.58
VMP1Q96GC9 NEK3-211ENST00000629912 141 ntTSL 5 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 METTL8-219ENST00000640734 726 ntTSL 2 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 STXBP4-204ENST00000434978 2807 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VMP1Q96GC9 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VMP1Q96GC9 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 PRLR-203ENST00000348262 1339 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VMP1Q96GC9 AC104964.3-201ENST00000606115 2860 ntBASIC5.16□□□□□ -1.58
VMP1Q96GC9 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 PCDH15-203ENST00000373955 4230 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
VMP1Q96GC9 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
VMP1Q96GC9 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 KANSL1L-209ENST00000457374 2264 ntTSL 2 BASIC5.16□□□□□ -1.58
VMP1Q96GC9 FAT3-201ENST00000409404 19030 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
VMP1Q96GC9 AC008079.2-201ENST00000623543 20396 ntBASIC5.15□□□□□ -1.58
VMP1Q96GC9 AP001642.1-201ENST00000624727 2117 ntBASIC5.15□□□□□ -1.58
VMP1Q96GC9 AC104623.2-202ENST00000623477 4002 ntBASIC5.15□□□□□ -1.58
VMP1Q96GC9 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.15□□□□□ -1.58
VMP1Q96GC9 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VMP1Q96GC9 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.58
VMP1Q96GC9 SCN3A-203ENST00000409101 6599 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.58
VMP1Q96GC9 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC5.15□□□□□ -1.58
VMP1Q96GC9 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.15□□□□□ -1.58
VMP1Q96GC9 RPL39P5-201ENST00000273411 449 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC004057.1-202ENST00000356247 284 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 RNU6-883P-201ENST00000384597 107 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 PSMA3-202ENST00000412908 908 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 CR848007.2-201ENST00000424918 787 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 RPL34P6-201ENST00000432390 345 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 AL512625.3-204ENST00000438699 1031 ntTSL 5 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC091976.1-201ENST00000458002 448 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 RPL35AP19-201ENST00000469425 329 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 SIAH1P1-201ENST00000479411 923 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 EEF1A1P25-201ENST00000495704 1267 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC090638.1-201ENST00000498296 909 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC025459.1-201ENST00000504072 156 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 LINC02430-201ENST00000504755 476 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 LINC00603-201ENST00000507027 733 ntTSL 5 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 SEMA6A-AS1-202ENST00000508424 862 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 ZCCHC10-210ENST00000513848 876 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 HDAC2-AS2-217ENST00000523087 493 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC079064.1-201ENST00000528365 362 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC079328.3-201ENST00000558905 691 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AL109741.3-201ENST00000561748 592 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC079414.1-201ENST00000563114 488 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AP005119.2-201ENST00000579735 1105 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 MIR4512-201ENST00000583257 77 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 AP005242.1-201ENST00000583946 467 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AL356580.1-201ENST00000604129 159 ntTSL 5 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC022467.1-201ENST00000614738 749 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 MIR6886-201ENST00000619864 61 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 AL023881.1-201ENST00000621088 301 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 MAPK6PS2-201ENST00000379571 2060 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC009951.1-201ENST00000623674 2614 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 SLC4A10-206ENST00000446997 5551 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 CARF-208ENST00000428585 2513 ntTSL 2 BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AL731532.2-201ENST00000623542 1953 ntBASIC5.15□□□□□ -1.59
VMP1Q96GC9 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.59
VMP1Q96GC9 AC000374.1-201ENST00000434698 1745 ntBASIC5.14□□□□□ -1.59
VMP1Q96GC9 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
VMP1Q96GC9 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VMP1Q96GC9 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VMP1Q96GC9 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
VMP1Q96GC9 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
VMP1Q96GC9 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
VMP1Q96GC9 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
VMP1Q96GC9 CNTN5-201ENST00000279463 5925 ntTSL 5 BASIC5.14□□□□□ -1.59
VMP1Q96GC9 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
VMP1Q96GC9 AL031119.1-201ENST00000404707 1879 ntBASIC5.14□□□□□ -1.59
VMP1Q96GC9 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC5.14□□□□□ -1.59
VMP1Q96GC9 RNA5SP234-201ENST00000363916 119 ntBASIC5.14□□□□□ -1.59
VMP1Q96GC9 RN7SKP229-201ENST00000410465 302 ntBASIC5.14□□□□□ -1.59
VMP1Q96GC9 AC007161.1-204ENST00000423039 460 ntBASIC5.14□□□□□ -1.59
VMP1Q96GC9 AL138785.1-201ENST00000425821 331 ntBASIC5.14□□□□□ -1.59
VMP1Q96GC9 AC002378.1-201ENST00000432360 298 ntTSL 3 BASIC5.14□□□□□ -1.59
VMP1Q96GC9 AL358972.1-201ENST00000434356 466 ntTSL 2 BASIC5.14□□□□□ -1.59
VMP1Q96GC9 KRTAP8-2P-201ENST00000440620 186 ntBASIC5.14□□□□□ -1.59
VMP1Q96GC9 LINC01359-203ENST00000444349 381 ntTSL 5 BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 96.2 ms