Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 BBOX1-202ENST00000525090 1596 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 SLC35F5-213ENST00000638402 1554 ntTSL 5 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 MLIP-203ENST00000370877 1234 ntAPPRIS ALT2 TSL 5 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 NCSTNP1-201ENST00000406229 144 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 RPS16P5-201ENST00000406501 404 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 IL6-206ENST00000407492 926 ntTSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 OR2AM1P-201ENST00000422137 422 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC090018.1-201ENST00000434369 367 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 VN1R48P-201ENST00000448149 1036 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 TMSB4X-204ENST00000451311 628 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC009963.2-201ENST00000453431 138 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC025566.1-201ENST00000477153 490 ntTSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 RN7SL809P-201ENST00000482040 297 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 RN7SL244P-201ENST00000493405 297 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 OR52A4P-203ENST00000498233 1014 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 TMEM108-AS1-201ENST00000504993 705 ntTSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 IGKV2D-10-201ENST00000520194 281 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC078906.1-201ENST00000523602 798 ntTSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 C14orf105-210ENST00000534126 1030 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC008033.2-201ENST00000542626 177 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC104938.1-202ENST00000563041 630 ntTSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 RPL26-204ENST00000578812 1002 ntTSL 2 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 MIR4691-201ENST00000583764 85 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC009303.2-201ENST00000585381 1083 ntTSL 3 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC011626.1-201ENST00000604710 562 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AL133406.3-201ENST00000606817 541 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AP005131.7-201ENST00000610087 611 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC243654.3-201ENST00000617427 735 ntTSL 5 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 FAM197Y3-202ENST00000427622 2325 ntTSL 5 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 FAM197Y7-202ENST00000433321 2325 ntTSL 2 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 TMEM154-201ENST00000304385 10698 ntAPPRIS P2 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 ATP1B4-202ENST00000361319 3856 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
HDDC3Q8N4P3 FBXO38-218ENST00000513826 3585 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC010300.1-201ENST00000600671 5134 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 RMST-202ENST00000541282 2099 ntTSL 2 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 CSDE1-202ENST00000339438 4006 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 BBX-206ENST00000415149 8930 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 OR9G4-201ENST00000302957 984 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 GNAS-202ENST00000306090 477 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 RN7SKP145-201ENST00000363291 303 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 RNU1-32P-201ENST00000363937 159 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 RNVU1-6-201ENST00000364688 164 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 C1orf54-202ENST00000369099 600 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 SNORA70.6-201ENST00000383934 134 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 MIR589-201ENST00000385238 99 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 ZNF736P10Y-201ENST00000403990 1110 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 NPM1P40-201ENST00000412758 733 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 CHEK2P3-201ENST00000416118 248 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC009302.1-201ENST00000417147 390 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 XKRYP6-201ENST00000440468 1116 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 XKRYP3-201ENST00000442113 1116 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC011753.3-201ENST00000443436 406 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AL589765.3-201ENST00000446084 462 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC099063.2-201ENST00000446360 662 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 NOP56P2-201ENST00000447491 769 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 Z99127.1-202ENST00000448686 526 ntTSL 2 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AL354710.1-201ENST00000453641 246 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 RPS24P16-201ENST00000497294 392 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC067904.2-201ENST00000517322 1283 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 MAL2-201ENST00000522112 573 ntTSL 4 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 SAMD15-202ENST00000533095 412 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 OR5AN2P-201ENST00000534535 896 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC126323.3-201ENST00000565136 564 ntTSL 4 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC100872.1-201ENST00000577765 501 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 MIR7853-201ENST00000584820 132 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 RPL27-207ENST00000590864 569 ntTSL 2 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 ATL2-217ENST00000629272 1242 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 MLIP-213ENST00000514921 5743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 SDAD1P1-202ENST00000524156 2051 ntBASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 VIT-206ENST00000457137 1344 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 RPGRIP1L-201ENST00000262135 8195 ntAPPRIS P3 TSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 MYBPC1-201ENST00000361466 3899 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 IKZF2-207ENST00000434687 3888 ntAPPRIS P2 TSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.17□□□□□ -1.58
HDDC3Q8N4P3 LINC00504-201ENST00000505089 4672 ntTSL 2 BASIC5.17□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms