Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 EQTN-204ENST00000537675 879 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 LINC02258-201ENST00000551280 777 ntTSL 2 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 BLZF2P-201ENST00000553776 1130 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 PARP1P2-201ENST00000556806 195 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC074050.3-201ENST00000569175 441 ntTSL 4 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC126365.2-201ENST00000580630 379 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC104687.2-201ENST00000604442 342 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 BNIP3P35-201ENST00000604530 490 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AL161616.2-201ENST00000622001 565 ntTSL 4 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 CASC15-208ENST00000636388 1174 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 UGP2-232ENST00000640075 567 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 VIP-201ENST00000367243 1581 ntAPPRIS ALT1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 VIP-202ENST00000367244 1584 ntAPPRIS P4 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 SLC12A1-201ENST00000330289 1764 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 NOL4-202ENST00000535384 1853 ntTSL 2 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 ZNF26-201ENST00000328654 17601 ntAPPRIS P3 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 OR10A5-201ENST00000299454 1054 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 GABRG3-201ENST00000333743 1235 ntTSL 5 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 RN7SKP113-201ENST00000363891 295 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 SNORA70.2-201ENST00000364506 135 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 SNX10-203ENST00000409367 746 ntTSL 5 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 VN1R42P-201ENST00000424651 344 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 ANKRD10-IT1-201ENST00000426991 800 ntTSL 2 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC023271.1-201ENST00000445936 1090 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC012512.1-201ENST00000446594 718 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 HMGB1P5-202ENST00000451497 985 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 CREM-228ENST00000473940 1182 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 PHC3-208ENST00000481639 1075 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC092546.1-202ENST00000505628 499 ntTSL 2 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC119751.4-201ENST00000507498 357 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC074255.1-201ENST00000511259 501 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 LINC02497-201ENST00000515292 507 ntTSL 3 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 LINC00535-204ENST00000520513 305 ntTSL 3 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AP001267.3-202ENST00000525992 448 ntTSL 3 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 ATXN3-215ENST00000532032 1191 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 OR5AN2P-201ENST00000534535 896 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC004217.2-201ENST00000547401 751 ntTSL 3 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AL049870.4-201ENST00000555741 486 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC004862.1-203ENST00000598433 1020 ntTSL 5 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AL391001.1-201ENST00000602747 715 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 SUMO2P14-201ENST00000604488 293 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AL161616.1-201ENST00000611867 286 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC005156.1-201ENST00000613371 573 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 C8orf59-210ENST00000614462 734 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 SATB1-AS1-259ENST00000629477 853 ntTSL 5 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 MTND5P11-201ENST00000511037 1812 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 MMRN1-202ENST00000394980 5217 ntAPPRIS P1 TSL 5 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 AC011933.2-201ENST00000578539 2790 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 RLIMP2-201ENST00000427891 1563 ntBASIC5.24□□□□□ -1.57
COL28A1Q2UY09 C2orf66-201ENST00000342506 1669 ntAPPRIS P1 TSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 KMO-202ENST00000366557 4888 ntAPPRIS ALT2 TSL 5 BASIC5.24□□□□□ -1.57
COL28A1Q2UY09 PNLIPRP3-201ENST00000369230 2354 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 NBPF10-201ENST00000583866 13042 ntAPPRIS P1 TSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC092376.2-201ENST00000622621 4116 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 OR2AT4-203ENST00000641541 8795 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 LINC01189-201ENST00000428440 3321 ntTSL 2 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 Y_RNA.126-201ENST00000363382 111 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 RNU6-1257P-201ENST00000384625 110 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 TRAV8-7-201ENST00000390456 341 ntAPPRIS P1 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 MIR3681HG-202ENST00000412606 578 ntTSL 5 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AL354692.1-201ENST00000423044 315 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AL139819.1-201ENST00000429420 471 ntTSL 3 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC092168.2-201ENST00000430586 717 ntTSL 3 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 RNF2P1-201ENST00000442955 1010 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AC234781.3-201ENST00000452540 973 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.23□□□□□ -1.57
COL28A1Q2UY09 RPS23P2-201ENST00000463671 415 ntBASIC5.23□□□□□ -1.57
COL28A1Q2UY09 RN7SL570P-201ENST00000484405 292 ntBASIC5.23□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 90 ms