Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 AC084149.1-201ENST00000437233 284 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AC005154.2-201ENST00000438110 379 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 NPM1P33-201ENST00000438918 872 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AL591473.1-201ENST00000464297 313 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 AC131254.2-201ENST00000521908 550 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AL110118.1-201ENST00000553543 400 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 DNAL1-205ENST00000554339 548 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXF1Q12946 MIR4480-201ENST00000582492 71 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AC098935.2-201ENST00000604222 466 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 NAA60-237ENST00000615865 326 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AC100827.5-201ENST00000615883 426 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXF1Q12946 AJ009632.2-207ENST00000634659 527 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXF1Q12946 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXF1Q12946 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXF1Q12946 ABCA12-201ENST00000272895 9100 ntAPPRIS P1 TSL 1 (best) BASIC4.28□□□□□ -1.72
FOXF1Q12946 CASC8-203ENST00000502082 1420 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXF1Q12946 MTND5P12-201ENST00000502851 1449 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 AC010928.1-201ENST00000592477 1447 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 RBPJP2-201ENST00000618187 1444 ntBASIC4.28□□□□□ -1.72
FOXF1Q12946 LINC02085-201ENST00000465215 2051 ntTSL 2 BASIC4.28□□□□□ -1.72
FOXF1Q12946 NECAB1-202ENST00000521366 2908 ntTSL 1 (best) BASIC4.28□□□□□ -1.72
FOXF1Q12946 PTK2-212ENST00000519419 4439 ntTSL 5 BASIC4.28□□□□□ -1.72
FOXF1Q12946 TNRC6B-202ENST00000335727 17933 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 CEP97-201ENST00000341893 8361 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 TRIM77-201ENST00000398290 1353 ntAPPRIS P1 TSL 5 BASIC4.27□□□□□ -1.73
FOXF1Q12946 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXF1Q12946 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 C1orf112-202ENST00000359326 4002 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 CLEC12A-205ENST00000434319 1515 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 C6orf10-210ENST00000617061 1904 ntAPPRIS ALT2 TSL 5 BASIC4.27□□□□□ -1.73
FOXF1Q12946 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.27□□□□□ -1.73
FOXF1Q12946 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 CYTOR-204ENST00000409898 560 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXF1Q12946 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 RPL7P57-201ENST00000423238 740 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 NMNAT1P2-201ENST00000435192 860 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 AC016831.4-201ENST00000438302 307 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 AC006466.1-201ENST00000438721 289 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 MIR4435-2HG-214ENST00000453478 560 ntTSL 4 BASIC4.27□□□□□ -1.73
FOXF1Q12946 RPL5P22-201ENST00000480199 884 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 RPS26P24-201ENST00000497656 331 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 AC138938.1-201ENST00000515431 782 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 AP003400.1-201ENST00000528319 231 ntTSL 5 BASIC4.27□□□□□ -1.73
FOXF1Q12946 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXF1Q12946 AL133485.1-201ENST00000555966 392 ntTSL 2 BASIC4.27□□□□□ -1.73
FOXF1Q12946 AC103876.1-201ENST00000568634 418 ntTSL 3 BASIC4.27□□□□□ -1.73
FOXF1Q12946 AC011815.3-201ENST00000624194 473 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 OR2H1-203ENST00000377136 3024 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
FOXF1Q12946 ZBTB38-201ENST00000321464 3588 ntAPPRIS P1 BASIC4.27□□□□□ -1.73
FOXF1Q12946 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 PROS2P-201ENST00000474651 1951 ntBASIC4.27□□□□□ -1.73
FOXF1Q12946 RGS5-201ENST00000313961 5862 ntAPPRIS P3 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 LINC01249-201ENST00000412134 2663 ntTSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC4.27□□□□□ -1.73
FOXF1Q12946 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXF1Q12946 RFC3-202ENST00000434425 1461 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXF1Q12946 AL035419.1-201ENST00000397037 564 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 IL6-203ENST00000401651 539 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXF1Q12946 AL592291.1-201ENST00000403830 352 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AP000580.1-201ENST00000404439 358 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AL080315.1-201ENST00000406055 466 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AL139128.1-201ENST00000413921 941 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 LINC01442-201ENST00000414201 704 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXF1Q12946 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXF1Q12946 RPL36AP10-201ENST00000421785 322 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 RPS26P4-201ENST00000431743 355 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AL049745.1-201ENST00000433953 286 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AC097523.2-201ENST00000435551 652 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AL772161.1-201ENST00000439130 476 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 MRPL48P1-201ENST00000445390 636 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 IMMP2L-205ENST00000450877 761 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXF1Q12946 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXF1Q12946 ZFRP1-201ENST00000457579 2970 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AP000942.1-201ENST00000463969 747 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AC090142.1-201ENST00000465776 462 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AC006967.1-201ENST00000467608 589 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXF1Q12946 AC025164.1-201ENST00000496249 478 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AC231760.1-201ENST00000498002 260 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 PTPN20-213ENST00000502705 854 ntTSL 1 (best) BASIC4.26□□□□□ -1.73
FOXF1Q12946 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC4.26□□□□□ -1.73
FOXF1Q12946 LINC02234-202ENST00000513288 705 ntTSL 5 BASIC4.26□□□□□ -1.73
FOXF1Q12946 AC008641.1-201ENST00000523781 248 ntTSL 3 BASIC4.26□□□□□ -1.73
FOXF1Q12946 AC105129.1-201ENST00000560250 297 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 RN7SL652P-201ENST00000577769 300 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 MIR4443-201ENST00000585052 53 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 AL122125.1-201ENST00000616999 600 ntBASIC4.26□□□□□ -1.73
FOXF1Q12946 ACKR4-201ENST00000249887 1914 ntAPPRIS P1 TSL 1 (best) BASIC4.26□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 87.9 ms