Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 ZFP62-207ENST00000512132 4010 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 ETV1-201ENST00000242066 6348 ntTSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 GALNTL5-206ENST00000431418 1678 ntAPPRIS P1 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 NUSAP1-202ENST00000414849 2274 ntAPPRIS ALT2 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 SLC17A2-203ENST00000377850 2524 ntAPPRIS ALT2 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 AIMP1-203ENST00000442366 2519 ntAPPRIS P3 TSL 5 BASIC6.74□□□□□ -1.33
MSX1P28360 LINC02535-201ENST00000455071 2513 ntTSL 2 BASIC6.74□□□□□ -1.33
MSX1P28360 CPSF6-202ENST00000435070 6616 ntAPPRIS P1 TSL 1 (best) BASIC6.74□□□□□ -1.33
MSX1P28360 OR10K2-202ENST00000641042 3023 ntAPPRIS P1 BASIC6.74□□□□□ -1.33
MSX1P28360 ARHGAP28-201ENST00000262227 5369 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 NLRC4-204ENST00000404025 3581 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 MTND4P35-201ENST00000604257 1375 ntBASIC6.73□□□□□ -1.33
MSX1P28360 GRXCR2-201ENST00000377976 2002 ntAPPRIS P1 TSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 ZNF844-202ENST00000441304 2036 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 TMX2-202ENST00000378312 1521 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 AGTR1-205ENST00000461609 1545 ntAPPRIS P1 TSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 ADGRB3-201ENST00000238918 2927 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 GNG13-201ENST00000248150 984 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 OR52E2-201ENST00000321522 978 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSX1P28360 RNU6-223P-201ENST00000362830 107 ntBASIC6.73□□□□□ -1.33
MSX1P28360 RNU6-1309P-201ENST00000363305 108 ntBASIC6.73□□□□□ -1.33
MSX1P28360 RGS8-202ENST00000367556 843 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 RN7SKP240-201ENST00000410583 375 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC127391.1-201ENST00000411737 98 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC009413.1-201ENST00000414823 399 ntBASIC6.73□□□□□ -1.33
MSX1P28360 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 AC127537.1-201ENST00000418183 748 ntBASIC6.73□□□□□ -1.33
MSX1P28360 FTOP1-201ENST00000419363 861 ntBASIC6.73□□□□□ -1.33
MSX1P28360 RPL17P17-201ENST00000419491 557 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC004946.1-201ENST00000421825 751 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 SETP9-201ENST00000423837 832 ntBASIC6.73□□□□□ -1.33
MSX1P28360 OR10T1P-201ENST00000424327 947 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 HSFX3-201ENST00000431993 1264 ntAPPRIS P1 TSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 GAS5-211ENST00000432536 959 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 NPM1P18-201ENST00000434232 732 ntBASIC6.73□□□□□ -1.33
MSX1P28360 SNRPEP7-201ENST00000438350 220 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AF196972.1-201ENST00000445586 653 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 AL672138.1-201ENST00000450604 1015 ntBASIC6.73□□□□□ -1.33
MSX1P28360 SLAMF6P1-201ENST00000451067 602 ntBASIC6.73□□□□□ -1.33
MSX1P28360 FGF12-AS3-201ENST00000452848 291 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 AC073476.1-201ENST00000452854 407 ntBASIC6.73□□□□□ -1.33
MSX1P28360 GLRXP3-201ENST00000470810 321 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC084878.1-201ENST00000480555 648 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC012158.1-202ENST00000482431 1132 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 AL035404.1-201ENST00000497982 568 ntBASIC6.73□□□□□ -1.33
MSX1P28360 KLHL2P1-201ENST00000508691 521 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 SNORA40.12-201ENST00000516329 111 ntBASIC6.73□□□□□ -1.33
MSX1P28360 Vault.3-201ENST00000516676 95 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 OR4C1P-201ENST00000530880 937 ntBASIC6.73□□□□□ -1.33
MSX1P28360 DERA-209ENST00000532964 854 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 SCOCP1-201ENST00000554676 349 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AL139317.3-202ENST00000555689 528 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 AC079075.1-201ENST00000559543 878 ntBASIC6.73□□□□□ -1.33
MSX1P28360 HYKK-203ENST00000563233 734 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 AC009117.1-201ENST00000563948 554 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC012447.1-201ENST00000577914 682 ntTSL 3 BASIC6.73□□□□□ -1.33
MSX1P28360 MIR4742-201ENST00000581069 85 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC018521.2-202ENST00000582142 473 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 MIR4503-201ENST00000582187 83 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC006116.6-201ENST00000593258 1103 ntBASIC6.73□□□□□ -1.33
MSX1P28360 XIAPP1-201ENST00000603162 600 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AP001554.1-201ENST00000604533 376 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 AC103710.3-201ENST00000608157 948 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AL133173.2-201ENST00000614270 90 ntBASIC6.73□□□□□ -1.33
MSX1P28360 LINC00923-204ENST00000614972 1181 ntTSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 AC037198.3-201ENST00000616754 526 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC023509.5-201ENST00000617434 807 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC233309.1-201ENST00000619522 751 ntBASIC6.73□□□□□ -1.33
MSX1P28360 AC244196.1-201ENST00000620569 409 ntAPPRIS P1 BASIC6.73□□□□□ -1.33
MSX1P28360 MIR193BHG-214ENST00000641765 509 ntBASIC6.73□□□□□ -1.33
MSX1P28360 EEF1A1P16-201ENST00000325349 1414 ntBASIC6.73□□□□□ -1.33
MSX1P28360 MDGA2-203ENST00000426342 2871 ntAPPRIS P2 TSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 DTNA-205ENST00000399113 2232 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 KYNU-203ENST00000409512 1576 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 CD86-209ENST00000493101 1572 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 ZNF10-202ENST00000402932 1967 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 KIDINS220-201ENST00000256707 7361 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 AP2B1-217ENST00000618940 3415 ntAPPRIS P1 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 ZNF566-201ENST00000392170 2755 ntAPPRIS ALT2 TSL 5 BASIC6.73□□□□□ -1.33
MSX1P28360 ADAM2-201ENST00000265708 2672 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 AP002833.3-201ENST00000625075 2265 ntBASIC6.73□□□□□ -1.33
MSX1P28360 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.73□□□□□ -1.33
MSX1P28360 FANCD2-201ENST00000287647 5219 ntAPPRIS P3 TSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 LINC00158-201ENST00000332587 1476 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 LSM8-204ENST00000424702 4030 ntTSL 1 (best) BASIC6.73□□□□□ -1.33
MSX1P28360 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
MSX1P28360 ENTPD1-201ENST00000371205 2035 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 91.4 ms