Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 PGM5P4-201ENST00000421970 445 ntBASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 AC018470.1-201ENST00000624790 3129 ntBASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
USH1CQ9Y6N9 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 AC097381.1-201ENST00000429019 1296 ntBASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 SLC7A5P1-201ENST00000568957 537 ntBASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 LTB4R2-202ENST00000528054 3092 ntBASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 KLHL40-201ENST00000287777 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
USH1CQ9Y6N9 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.7
USH1CQ9Y6N9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.39■□□□□ 0.7
USH1CQ9Y6N9 SGSM2-201ENST00000268989 4863 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.7
USH1CQ9Y6N9 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
USH1CQ9Y6N9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 SUDS3P1-201ENST00000505831 966 ntBASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 AC087633.2-202ENST00000565166 1439 ntBASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 ITGB7-209ENST00000550743 2138 ntTSL 5 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
USH1CQ9Y6N9 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 DPYSL3-202ENST00000398514 5309 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 NDUFA10-203ENST00000404554 1557 ntTSL 5 BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 AC027612.3-201ENST00000413684 1047 ntBASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.38■□□□□ 0.69
USH1CQ9Y6N9 PCDHB18P-201ENST00000524813 2368 ntBASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 PTBP1P-201ENST00000554374 1601 ntBASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 LINC02228-203ENST00000641970 1355 ntBASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 LTBP3-202ENST00000322147 4046 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 AC019069.1-201ENST00000610008 1333 ntBASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 VMO1-204ENST00000441199 741 ntTSL 2 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 AL161938.1-201ENST00000569833 2180 ntBASIC19.37■□□□□ 0.69
USH1CQ9Y6N9 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms