Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
SIX4Q9UIU6 CR392000.1-201ENST00000624770 1228 ntBASIC20.92■□□□□ 0.94
SIX4Q9UIU6 ABBA01031674.1-201ENST00000635145 728 ntBASIC20.92■□□□□ 0.94
SIX4Q9UIU6 LINC01465-201ENST00000408887 1940 ntBASIC20.92■□□□□ 0.94
SIX4Q9UIU6 RTKN-201ENST00000233330 2220 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SIX4Q9UIU6 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SIX4Q9UIU6 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 KRT16P1-201ENST00000399124 1418 ntBASIC20.91■□□□□ 0.94
SIX4Q9UIU6 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 AC004080.6-201ENST00000467897 919 ntTSL 5 BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 WDR41-208ENST00000507029 1553 ntTSL 2 BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 IL15-208ENST00000529613 1355 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 AC011445.1-201ENST00000601911 877 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
SIX4Q9UIU6 HDAC1-201ENST00000373548 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 HNRNPLL-206ENST00000410076 1687 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 TXNL1-211ENST00000590954 1339 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 AC004980.1-204ENST00000429707 299 ntBASIC20.9■□□□□ 0.94
SIX4Q9UIU6 PPP1R14BP5-201ENST00000440334 435 ntBASIC20.9■□□□□ 0.94
SIX4Q9UIU6 CCDC124-201ENST00000445755 938 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 CCDC124-203ENST00000597436 1055 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 TPGS2-221ENST00000614939 1268 ntTSL 4 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC20.9■□□□□ 0.94
SIX4Q9UIU6 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 PTAR1-205ENST00000472967 1689 ntTSL 2 BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 NAA60-235ENST00000576916 1567 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
SIX4Q9UIU6 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 AC022509.3-202ENST00000545819 566 ntTSL 3 BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 FENDRR-203ENST00000595886 3095 ntTSL 2 BASIC20.89■□□□□ 0.93
SIX4Q9UIU6 ACTL6A-201ENST00000392662 1899 ntTSL 2 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 AC026471.5-201ENST00000615068 467 ntBASIC20.88■□□□□ 0.93
SIX4Q9UIU6 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 AC004982.2-201ENST00000609497 1578 ntTSL 2 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.88■□□□□ 0.93
SIX4Q9UIU6 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 NAT6-201ENST00000354862 1330 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 ANKRD18DP-204ENST00000455355 1975 ntBASIC20.87■□□□□ 0.93
SIX4Q9UIU6 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 AL359399.1-201ENST00000557610 462 ntTSL 3 BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 SKP2-208ENST00000546211 1589 ntTSL 5 BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 CHTOP-204ENST00000368694 2096 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
SIX4Q9UIU6 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms