Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 TRAM1L1-201ENST00000310754 2023 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 DBI-210ENST00000542275 757 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 AC013268.1-206ENST00000638368 961 ntBASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 AC112229.1-201ENST00000639295 961 ntBASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
CHMP1AQ9HD42 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 AC093484.2-201ENST00000580996 2166 ntBASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 TNFRSF18-202ENST00000379265 705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 KRT18P11-201ENST00000435214 1283 ntBASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 SPI1-203ENST00000533030 661 ntTSL 2 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 CIRBP-222ENST00000589235 1073 ntAPPRIS ALT1 TSL 2 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 RGMA-208ENST00000556658 1889 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 GCGR-202ENST00000570996 1872 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 CYTH1-209ENST00000589296 2159 ntTSL 5 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 OTUD1-201ENST00000376495 2933 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
CHMP1AQ9HD42 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 EVX1-202ENST00000496902 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 KRT16P6-202ENST00000425692 1426 ntBASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 PLCL2-204ENST00000615277 4147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 SLC34A3-201ENST00000361134 2124 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 AC034268.1-201ENST00000441047 882 ntBASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 AC137761.2-201ENST00000561729 223 ntBASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 AC145350.3-201ENST00000569033 163 ntBASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 ADAD1-202ENST00000388724 1912 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 DHRS7-201ENST00000216500 2322 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC16.74■□□□□ 0.27
CHMP1AQ9HD42 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
CHMP1AQ9HD42 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms