Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC20.5■□□□□ 0.87
CDX2Q99626 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.5■□□□□ 0.87
CDX2Q99626 AL353801.3-201ENST00000609898 542 ntBASIC20.5■□□□□ 0.87
CDX2Q99626 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC20.5■□□□□ 0.87
CDX2Q99626 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC20.5■□□□□ 0.87
CDX2Q99626 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC20.5■□□□□ 0.87
CDX2Q99626 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDX2Q99626 KLHDC4-203ENST00000347925 1821 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDX2Q99626 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC20.5■□□□□ 0.87
CDX2Q99626 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDX2Q99626 FGF17-201ENST00000359441 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDX2Q99626 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.49■□□□□ 0.87
CDX2Q99626 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC20.49■□□□□ 0.87
CDX2Q99626 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.49■□□□□ 0.87
CDX2Q99626 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX2Q99626 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX2Q99626 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX2Q99626 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX2Q99626 BX842568.4-201ENST00000421222 227 ntBASIC20.49■□□□□ 0.87
CDX2Q99626 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC20.49■□□□□ 0.87
CDX2Q99626 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.49■□□□□ 0.87
CDX2Q99626 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
CDX2Q99626 ABR-217ENST00000572441 563 ntTSL 4 BASIC20.49■□□□□ 0.87
CDX2Q99626 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC20.49■□□□□ 0.87
CDX2Q99626 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.49■□□□□ 0.87
CDX2Q99626 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC20.49■□□□□ 0.87
CDX2Q99626 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX2Q99626 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX2Q99626 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
CDX2Q99626 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 AL162741.1-201ENST00000565563 1558 ntBASIC20.48■□□□□ 0.87
CDX2Q99626 PSEN1-203ENST00000394157 1249 ntTSL 2 BASIC20.48■□□□□ 0.87
CDX2Q99626 AC005104.2-201ENST00000427818 678 ntBASIC20.48■□□□□ 0.87
CDX2Q99626 AP001005.1-201ENST00000571755 1248 ntBASIC20.48■□□□□ 0.87
CDX2Q99626 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC20.48■□□□□ 0.87
CDX2Q99626 PCMT1-203ENST00000367384 1938 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 PMS2P7-201ENST00000506558 1336 ntBASIC20.48■□□□□ 0.87
CDX2Q99626 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDX2Q99626 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC20.48■□□□□ 0.87
CDX2Q99626 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDX2Q99626 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.47■□□□□ 0.87
CDX2Q99626 RRNAD1-201ENST00000368216 2254 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDX2Q99626 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDX2Q99626 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CDX2Q99626 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
CDX2Q99626 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
CDX2Q99626 MRPL43-208ENST00000370242 884 ntTSL 2 BASIC20.47■□□□□ 0.87
CDX2Q99626 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC20.47■□□□□ 0.87
CDX2Q99626 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC20.47■□□□□ 0.87
CDX2Q99626 PITPNA-AS1-201ENST00000425081 542 ntTSL 2 BASIC20.47■□□□□ 0.87
CDX2Q99626 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.47■□□□□ 0.87
CDX2Q99626 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.47■□□□□ 0.87
CDX2Q99626 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDX2Q99626 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC20.47■□□□□ 0.87
CDX2Q99626 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
CDX2Q99626 AL160286.2-201ENST00000567150 934 ntBASIC20.47■□□□□ 0.87
CDX2Q99626 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDX2Q99626 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC20.47■□□□□ 0.87
CDX2Q99626 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDX2Q99626 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.47■□□□□ 0.87
CDX2Q99626 AC093525.10-201ENST00000625130 1569 ntBASIC20.46■□□□□ 0.87
CDX2Q99626 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDX2Q99626 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDX2Q99626 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDX2Q99626 CYB561-204ENST00000448884 1496 ntTSL 2 BASIC20.46■□□□□ 0.87
CDX2Q99626 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDX2Q99626 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDX2Q99626 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
CDX2Q99626 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC20.46■□□□□ 0.87
CDX2Q99626 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC20.46■□□□□ 0.87
CDX2Q99626 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC20.46■□□□□ 0.87
CDX2Q99626 TOB2P1-201ENST00000469761 992 ntBASIC20.46■□□□□ 0.87
CDX2Q99626 PPIE-208ENST00000470213 927 ntTSL 3 BASIC20.46■□□□□ 0.87
CDX2Q99626 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC20.46■□□□□ 0.87
CDX2Q99626 RNA5SP419-201ENST00000515908 135 ntBASIC20.46■□□□□ 0.87
CDX2Q99626 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.46■□□□□ 0.87
CDX2Q99626 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDX2Q99626 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 CD7-206ENST00000583376 1659 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 KLHL31-202ENST00000407079 1905 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.45■□□□□ 0.86
CDX2Q99626 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.45■□□□□ 0.86
CDX2Q99626 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC20.45■□□□□ 0.86
CDX2Q99626 SAYSD1-201ENST00000229903 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX2Q99626 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.45■□□□□ 0.86
CDX2Q99626 FABP5-202ENST00000396359 986 ntTSL 5 BASIC20.45■□□□□ 0.86
CDX2Q99626 TSPY22P-201ENST00000427496 604 ntBASIC20.45■□□□□ 0.86
CDX2Q99626 AP003396.1-201ENST00000501918 507 ntTSL 5 BASIC20.45■□□□□ 0.86
CDX2Q99626 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC20.45■□□□□ 0.86
CDX2Q99626 AC138894.3-201ENST00000603787 634 ntBASIC20.45■□□□□ 0.86
CDX2Q99626 AC064862.7-201ENST00000604520 867 ntBASIC20.45■□□□□ 0.86
CDX2Q99626 AL691403.2-201ENST00000618460 490 ntBASIC20.45■□□□□ 0.86
CDX2Q99626 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
CDX2Q99626 PRDX3-201ENST00000298510 1591 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms