Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 CKBP1-201ENST00000565489 1086 ntBASIC13.62□□□□□ -0.23
CSMD3Q7Z407 PRR29-207ENST00000580752 458 ntTSL 3 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 KRT8P41-201ENST00000533985 1514 ntBASIC13.62□□□□□ -0.23
CSMD3Q7Z407 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 LENG9-203ENST00000611161 1916 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 STX18-201ENST00000306200 2138 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 VGLL3-201ENST00000383698 2475 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 LY6E-213ENST00000522528 606 ntTSL 3 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CSMD3Q7Z407 AC131212.4-201ENST00000623606 975 ntBASIC13.62□□□□□ -0.23
CSMD3Q7Z407 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 CLN3-205ENST00000359984 1876 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 C17orf58-201ENST00000334461 1535 ntTSL 2 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 AL353719.1-201ENST00000566847 864 ntBASIC13.61□□□□□ -0.23
CSMD3Q7Z407 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 FEM1AP4-201ENST00000443167 1987 ntBASIC13.61□□□□□ -0.23
CSMD3Q7Z407 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 ANKRD29-201ENST00000322980 1658 ntTSL 2 BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
CSMD3Q7Z407 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 SLF2-205ENST00000609386 891 ntAPPRIS ALT2 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 TUB-203ENST00000534099 1759 ntTSL 2 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 TBC1D3P2-202ENST00000577902 1649 ntBASIC13.6□□□□□ -0.23
CSMD3Q7Z407 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 RNA5SP419-201ENST00000515908 135 ntBASIC13.6□□□□□ -0.23
CSMD3Q7Z407 AC111152.3-201ENST00000569699 673 ntBASIC13.6□□□□□ -0.23
CSMD3Q7Z407 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 AC006538.3-201ENST00000612495 578 ntBASIC13.6□□□□□ -0.23
CSMD3Q7Z407 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 CD37-204ENST00000535669 1674 ntTSL 2 BASIC13.6□□□□□ -0.23
CSMD3Q7Z407 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 DPP3P2-201ENST00000416030 1696 ntBASIC13.59□□□□□ -0.23
CSMD3Q7Z407 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 DHRS4-201ENST00000313250 1443 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC13.59□□□□□ -0.23
CSMD3Q7Z407 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC13.59□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms