Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.47■■□□□ 1.03
TPM1P09493 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM1P09493 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
TPM1P09493 DBNL-210ENST00000448521 1808 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM1P09493 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM1P09493 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.47■■□□□ 1.03
TPM1P09493 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TPM1P09493 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC21.47■■□□□ 1.03
TPM1P09493 CCM2-202ENST00000381112 1881 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
TPM1P09493 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM1P09493 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
TPM1P09493 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
TPM1P09493 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC21.46■■□□□ 1.03
TPM1P09493 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 PSMD3-201ENST00000264639 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
TPM1P09493 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.46■■□□□ 1.03
TPM1P09493 AC105020.6-201ENST00000621523 1217 ntBASIC21.46■■□□□ 1.03
TPM1P09493 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
TPM1P09493 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC21.46■■□□□ 1.03
TPM1P09493 TMEM8A-201ENST00000250930 2346 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
TPM1P09493 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 HR-201ENST00000312841 5351 ntTSL 5 BASIC21.46■■□□□ 1.03
TPM1P09493 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC21.46■■□□□ 1.03
TPM1P09493 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
TPM1P09493 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
TPM1P09493 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
TPM1P09493 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC21.45■■□□□ 1.02
TPM1P09493 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC21.45■■□□□ 1.02
TPM1P09493 ST3GAL3-201ENST00000262915 2470 ntTSL 5 BASIC21.45■■□□□ 1.02
TPM1P09493 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC21.45■■□□□ 1.02
TPM1P09493 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
TPM1P09493 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM1P09493 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM1P09493 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM1P09493 AC084032.1-201ENST00000552324 578 ntTSL 4 BASIC21.45■■□□□ 1.02
TPM1P09493 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.45■■□□□ 1.02
TPM1P09493 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.02
TPM1P09493 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.45■■□□□ 1.02
TPM1P09493 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC21.45■■□□□ 1.02
TPM1P09493 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
TPM1P09493 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC21.45■■□□□ 1.02
TPM1P09493 PTH2R-204ENST00000617735 2472 ntTSL 2 BASIC21.45■■□□□ 1.02
TPM1P09493 PVRIG-201ENST00000317271 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC21.44■■□□□ 1.02
TPM1P09493 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM1P09493 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.44■■□□□ 1.02
TPM1P09493 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.44■■□□□ 1.02
TPM1P09493 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM1P09493 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC21.44■■□□□ 1.02
TPM1P09493 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC21.44■■□□□ 1.02
TPM1P09493 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
TPM1P09493 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC21.43■■□□□ 1.02
TPM1P09493 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.43■■□□□ 1.02
TPM1P09493 KRT18P11-201ENST00000435214 1283 ntBASIC21.43■■□□□ 1.02
TPM1P09493 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.43■■□□□ 1.02
TPM1P09493 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.43■■□□□ 1.02
TPM1P09493 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC21.43■■□□□ 1.02
TPM1P09493 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
TPM1P09493 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 ELOC-209ENST00000602840 2780 ntTSL 5 BASIC21.43■■□□□ 1.02
TPM1P09493 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 TXNRD2-202ENST00000400518 2025 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 HLX-201ENST00000366903 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
TPM1P09493 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 VASH1-201ENST00000167106 5728 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
TPM1P09493 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms