Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RTN3O95197 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC20.56■□□□□ 0.88
RTN3O95197 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
RTN3O95197 CR392000.1-201ENST00000624770 1228 ntBASIC20.56■□□□□ 0.88
RTN3O95197 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC20.56■□□□□ 0.88
RTN3O95197 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 BTBD9-205ENST00000419706 2034 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 SLC36A1-209ENST00000521925 1621 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RTN3O95197 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
RTN3O95197 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
RTN3O95197 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTN3O95197 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.55■□□□□ 0.88
RTN3O95197 LINC01006-201ENST00000333319 2292 ntBASIC20.55■□□□□ 0.88
RTN3O95197 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
RTN3O95197 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.55■□□□□ 0.88
RTN3O95197 NUDT16P1-203ENST00000513809 620 ntBASIC20.55■□□□□ 0.88
RTN3O95197 AP003071.4-201ENST00000562276 1284 ntBASIC20.55■□□□□ 0.88
RTN3O95197 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC20.55■□□□□ 0.88
RTN3O95197 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTN3O95197 SNX21-213ENST00000614929 587 ntTSL 5 BASIC20.55■□□□□ 0.88
RTN3O95197 AL445675.2-201ENST00000620291 557 ntBASIC20.55■□□□□ 0.88
RTN3O95197 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTN3O95197 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTN3O95197 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.55■□□□□ 0.88
RTN3O95197 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTN3O95197 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTN3O95197 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RTN3O95197 AC099778.1-201ENST00000568593 1911 ntBASIC20.55■□□□□ 0.88
RTN3O95197 STK16-201ENST00000396738 1673 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTN3O95197 TWF2-203ENST00000499914 1440 ntTSL 5 BASIC20.54■□□□□ 0.88
RTN3O95197 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTN3O95197 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC20.54■□□□□ 0.88
RTN3O95197 TSPAN14-205ENST00000372158 1095 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
RTN3O95197 C1orf52-203ENST00000471115 1219 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTN3O95197 BAALC-AS1-207ENST00000522856 594 ntTSL 3 BASIC20.54■□□□□ 0.88
RTN3O95197 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC20.54■□□□□ 0.88
RTN3O95197 DECR2-212ENST00000627716 352 ntTSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.54■□□□□ 0.88
RTN3O95197 SSR1-204ENST00000474597 1808 ntTSL 5 BASIC20.54■□□□□ 0.88
RTN3O95197 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.54■□□□□ 0.88
RTN3O95197 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RTN3O95197 RPUSD2-202ENST00000559271 1558 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTN3O95197 DUSP15-209ENST00000486996 1651 ntTSL 2 BASIC20.54■□□□□ 0.88
RTN3O95197 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
RTN3O95197 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 KRT8P8-201ENST00000434750 1448 ntBASIC20.53■□□□□ 0.88
RTN3O95197 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RTN3O95197 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC20.53■□□□□ 0.88
RTN3O95197 RAMP1-204ENST00000409726 734 ntTSL 3 BASIC20.53■□□□□ 0.88
RTN3O95197 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.53■□□□□ 0.88
RTN3O95197 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.53■□□□□ 0.88
RTN3O95197 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RTN3O95197 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC20.53■□□□□ 0.88
RTN3O95197 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC20.53■□□□□ 0.88
RTN3O95197 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.53■□□□□ 0.88
RTN3O95197 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.53■□□□□ 0.88
RTN3O95197 AC073912.3-201ENST00000624414 853 ntBASIC20.53■□□□□ 0.88
RTN3O95197 LHX8-202ENST00000356261 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 CPLX3-201ENST00000395018 2082 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
RTN3O95197 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC20.53■□□□□ 0.88
RTN3O95197 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC20.53■□□□□ 0.88
RTN3O95197 LINC01521-201ENST00000504184 1943 ntBASIC20.53■□□□□ 0.88
RTN3O95197 HLA-G-201ENST00000360323 1427 ntAPPRIS P2 BASIC20.53■□□□□ 0.88
RTN3O95197 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
RTN3O95197 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 FEZF1-202ENST00000427185 1368 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC20.52■□□□□ 0.88
RTN3O95197 PHYHD1-207ENST00000421063 1182 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 NME1-207ENST00000480143 964 ntTSL 2 BASIC20.52■□□□□ 0.88
RTN3O95197 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC20.52■□□□□ 0.88
RTN3O95197 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC20.52■□□□□ 0.88
RTN3O95197 AL355075.4-201ENST00000554988 638 ntBASIC20.52■□□□□ 0.88
RTN3O95197 ARL16-209ENST00000573715 763 ntTSL 3 BASIC20.52■□□□□ 0.88
RTN3O95197 ARL16-211ENST00000576135 694 ntTSL 3 BASIC20.52■□□□□ 0.88
RTN3O95197 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.52■□□□□ 0.88
RTN3O95197 AL031985.4-201ENST00000642138 673 ntBASIC20.52■□□□□ 0.88
RTN3O95197 PYCR1-204ENST00000403172 1811 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RTN3O95197 RNF32-208ENST00000432459 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RTN3O95197 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms