Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 MGA-212ENST00000619521 1496 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC26.31■■□□□ 1.8
MSH5O43196 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 SIVA1-201ENST00000329967 802 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 CCDC152-202ENST00000388827 1237 ntTSL 2 BASIC26.31■■□□□ 1.8
MSH5O43196 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 SAPCD2P1-201ENST00000395413 1184 ntBASIC26.31■■□□□ 1.8
MSH5O43196 VN1R53P-201ENST00000429536 957 ntBASIC26.31■■□□□ 1.8
MSH5O43196 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 CES1P1-204ENST00000574030 877 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC26.31■■□□□ 1.8
MSH5O43196 AC120498.8-201ENST00000614275 531 ntBASIC26.31■■□□□ 1.8
MSH5O43196 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC26.31■■□□□ 1.8
MSH5O43196 CABP2-204ENST00000636477 941 ntTSL 5 BASIC26.31■■□□□ 1.8
MSH5O43196 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC26.31■■□□□ 1.8
MSH5O43196 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC26.31■■□□□ 1.8
MSH5O43196 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
MSH5O43196 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC26.3■■□□□ 1.8
MSH5O43196 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC26.3■■□□□ 1.8
MSH5O43196 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 GGT1-206ENST00000404223 952 ntTSL 2 BASIC26.3■■□□□ 1.8
MSH5O43196 AC087272.1-201ENST00000523624 533 ntBASIC26.3■■□□□ 1.8
MSH5O43196 SLC14A1-206ENST00000535474 1048 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC26.3■■□□□ 1.8
MSH5O43196 GGTLC2-204ENST00000613850 973 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 GGTLC2-205ENST00000618722 1047 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC26.3■■□□□ 1.8
MSH5O43196 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC26.3■■□□□ 1.8
MSH5O43196 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC26.3■■□□□ 1.8
MSH5O43196 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC26.3■■□□□ 1.8
MSH5O43196 PDHB-210ENST00000485460 1397 ntTSL 2 BASIC26.3■■□□□ 1.8
MSH5O43196 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC26.3■■□□□ 1.8
MSH5O43196 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
MSH5O43196 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC26.29■■□□□ 1.8
MSH5O43196 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
MSH5O43196 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 GDAP1L1-202ENST00000372952 722 ntTSL 5 BASIC26.29■■□□□ 1.8
MSH5O43196 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC26.29■■□□□ 1.8
MSH5O43196 MOK-228ENST00000523231 1114 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 C2orf69P4-201ENST00000565394 541 ntBASIC26.29■■□□□ 1.8
MSH5O43196 AC063950.1-202ENST00000600133 568 ntBASIC26.29■■□□□ 1.8
MSH5O43196 AL353708.3-201ENST00000610272 989 ntBASIC26.29■■□□□ 1.8
MSH5O43196 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC26.29■■□□□ 1.8
MSH5O43196 AL590326.2-201ENST00000625139 305 ntBASIC26.29■■□□□ 1.8
MSH5O43196 AC021079.1-201ENST00000625268 907 ntTSL 3 BASIC26.29■■□□□ 1.8
MSH5O43196 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC26.29■■□□□ 1.8
MSH5O43196 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC26.29■■□□□ 1.8
MSH5O43196 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC26.29■■□□□ 1.8
MSH5O43196 RAD23A-209ENST00000592268 1526 ntTSL 5 BASIC26.29■■□□□ 1.8
MSH5O43196 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC26.28■■□□□ 1.8
MSH5O43196 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 ISCA1-203ENST00000375991 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 C2orf76-201ENST00000334816 676 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC26.28■■□□□ 1.8
MSH5O43196 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC26.28■■□□□ 1.8
MSH5O43196 AC118282.1-201ENST00000506408 765 ntBASIC26.28■■□□□ 1.8
MSH5O43196 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC26.28■■□□□ 1.8
MSH5O43196 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC26.28■■□□□ 1.8
MSH5O43196 AC108673.3-201ENST00000609183 335 ntBASIC26.28■■□□□ 1.8
MSH5O43196 AL392048.1-201ENST00000613946 534 ntBASIC26.28■■□□□ 1.8
MSH5O43196 GTF2IRD2B-206ENST00000614064 573 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 AP000280.1-201ENST00000624800 832 ntBASIC26.28■■□□□ 1.8
MSH5O43196 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
MSH5O43196 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC26.28■■□□□ 1.8
MSH5O43196 ANXA2-201ENST00000332680 1444 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
MSH5O43196 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms