Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 GLRB-205ENST00000512619 728 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 AP003041.3-201ENST00000527151 707 ntBASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 NME4-212ENST00000621774 904 ntTSL 3 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 MAGED2-213ENST00000627068 1811 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
COL6A6A6NMZ7 UPK3B-201ENST00000257632 1296 ntAPPRIS P5 TSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 CIRBP-201ENST00000320936 1328 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 CIRBP-207ENST00000586472 1303 ntAPPRIS P3 TSL 3 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 AC116351.2-201ENST00000606540 1585 ntBASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 MRPL3P1-201ENST00000400109 1033 ntBASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 AC092183.1-201ENST00000469884 875 ntBASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 KRT18P58-201ENST00000527480 1120 ntBASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 NT5C-210ENST00000582160 860 ntTSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 RBPMS-203ENST00000339877 1341 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC17.6■□□□□ 0.41
COL6A6A6NMZ7 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 MIR1233-2-201ENST00000408138 82 ntBASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 MIR1233-1-201ENST00000408722 82 ntBASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 C20orf196-201ENST00000303142 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 NME1-202ENST00000336097 986 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 NME1-203ENST00000393196 940 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 CHCHD2P8-201ENST00000429873 447 ntBASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 BX276092.5-203ENST00000456199 560 ntBASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.59■□□□□ 0.41
COL6A6A6NMZ7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.41
COL6A6A6NMZ7 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC17.58■□□□□ 0.41
COL6A6A6NMZ7 RUFY3-203ENST00000417478 2143 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A6A6NMZ7 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
COL6A6A6NMZ7 MIR574-201ENST00000385209 96 ntBASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 GCSHP2-201ENST00000560971 527 ntBASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 TBX6-201ENST00000279386 1796 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 TBX6-205ENST00000627355 1796 ntTSL 5 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 AUP1-201ENST00000377526 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 RAB29-205ENST00000446390 1441 ntTSL 2 BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 KRT18P31-201ENST00000506277 1292 ntBASIC17.58■□□□□ 0.4
COL6A6A6NMZ7 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms