Protein–RNA interactions for Protein: A0A1B0GU29

SMIM28, Small integral membrane protein 28, humanhuman

Predictions only

Length 152 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM28A0A1B0GU29 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMIM28A0A1B0GU29 PRSS50-202ENST00000315170 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SMIM28A0A1B0GU29 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 DBN1-210ENST00000512501 1878 ntTSL 3 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 GPRIN2-201ENST00000374314 1696 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 IMMP2L-202ENST00000405709 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 NT5C1A-201ENST00000235628 1107 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 Z85996.1-201ENST00000494644 937 ntBASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 AP003501.2-201ENST00000524433 477 ntTSL 4 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 AKT1-211ENST00000554848 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 WWOX-205ENST00000539474 1670 ntTSL 5 BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SMIM28A0A1B0GU29 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 CYP2D8P-201ENST00000433633 1490 ntBASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 FAM228A-201ENST00000295150 1774 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 AL160286.2-201ENST00000567150 934 ntBASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 DGCR10-201ENST00000609839 495 ntBASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 SYT5-202ENST00000537500 2612 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.95■□□□□ 0.94
SMIM28A0A1B0GU29 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 ACTR3B-203ENST00000397282 1692 ntTSL 2 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 DUSP23-203ENST00000368109 729 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 AC004951.3-201ENST00000418645 1148 ntBASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 GRAMD4P8-201ENST00000605465 1115 ntBASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 AC011298.2-201ENST00000617989 482 ntBASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 TMEM175-220ENST00000515740 1514 ntTSL 3 BASIC20.94■□□□□ 0.94
SMIM28A0A1B0GU29 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 PABPC1L-204ENST00000255136 2129 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 SLC38A11-203ENST00000409149 1621 ntAPPRIS P2 TSL 2 BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 USP46-AS1-201ENST00000503051 1048 ntTSL 3 BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 AC097488.1-201ENST00000507834 756 ntBASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 AP000692.2-201ENST00000608391 879 ntBASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.93■□□□□ 0.94
SMIM28A0A1B0GU29 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SMIM28A0A1B0GU29 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms