Protein–RNA interactions for Protein: Q9R060

Nubp1, Cytosolic Fe-S cluster assembly factor NUBP1, mousemouse

Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nubp1Q9R060 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nubp1Q9R060 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nubp1Q9R060 Smad7-202ENSMUST00000168918 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Nubp1Q9R060 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nubp1Q9R060 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nubp1Q9R060 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
Nubp1Q9R060 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Nubp1Q9R060 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nubp1Q9R060 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Nubp1Q9R060 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nubp1Q9R060 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Nubp1Q9R060 Bloc1s2-201ENSMUST00000079033 878 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nubp1Q9R060 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Nubp1Q9R060 C530008M17Rik-201ENSMUST00000086909 1844 ntBASIC20.49■□□□□ 0.87
Nubp1Q9R060 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC20.49■□□□□ 0.87
Nubp1Q9R060 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Nubp1Q9R060 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Nubp1Q9R060 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Nubp1Q9R060 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Nubp1Q9R060 Adap1-201ENSMUST00000110865 2557 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
Nubp1Q9R060 Apcdd1-202ENSMUST00000163716 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nubp1Q9R060 Gm30023-201ENSMUST00000197970 889 ntBASIC20.48■□□□□ 0.87
Nubp1Q9R060 Mir3960-201ENSMUST00000198213 73 ntBASIC20.48■□□□□ 0.87
Nubp1Q9R060 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Nubp1Q9R060 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Nubp1Q9R060 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nubp1Q9R060 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nubp1Q9R060 Gm22567-201ENSMUST00000175542 342 ntBASIC20.46■□□□□ 0.87
Nubp1Q9R060 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC20.46■□□□□ 0.87
Nubp1Q9R060 Siva1-201ENSMUST00000021728 924 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nubp1Q9R060 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
Nubp1Q9R060 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
Nubp1Q9R060 Fam69b-201ENSMUST00000074240 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.87
Nubp1Q9R060 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Nubp1Q9R060 Gm5812-201ENSMUST00000061073 957 ntBASIC20.45■□□□□ 0.86
Nubp1Q9R060 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC20.45■□□□□ 0.86
Nubp1Q9R060 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nubp1Q9R060 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nubp1Q9R060 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nubp1Q9R060 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nubp1Q9R060 Cbr3-201ENSMUST00000039620 1170 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nubp1Q9R060 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Nubp1Q9R060 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
Nubp1Q9R060 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
Nubp1Q9R060 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Nubp1Q9R060 Hexdc-202ENSMUST00000106117 2149 ntAPPRIS P2 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nubp1Q9R060 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
Nubp1Q9R060 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Nubp1Q9R060 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nubp1Q9R060 Noxo1-201ENSMUST00000019464 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nubp1Q9R060 Dmwd-201ENSMUST00000032570 2494 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nubp1Q9R060 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nubp1Q9R060 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC20.4■□□□□ 0.86
Nubp1Q9R060 Tpm1-216ENSMUST00000113707 1898 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
Nubp1Q9R060 Gm14523-201ENSMUST00000117260 558 ntBASIC20.39■□□□□ 0.85
Nubp1Q9R060 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC20.39■□□□□ 0.85
Nubp1Q9R060 Pcf11-205ENSMUST00000208255 1720 ntBASIC20.39■□□□□ 0.85
Nubp1Q9R060 Zfp131-206ENSMUST00000223813 2561 ntAPPRIS P3 BASIC20.39■□□□□ 0.85
Nubp1Q9R060 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nubp1Q9R060 Cyp26a1-201ENSMUST00000025946 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Nubp1Q9R060 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nubp1Q9R060 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nubp1Q9R060 Irx4-201ENSMUST00000022095 2589 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nubp1Q9R060 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nubp1Q9R060 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Nubp1Q9R060 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.37■□□□□ 0.85
Nubp1Q9R060 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC20.36■□□□□ 0.85
Nubp1Q9R060 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC20.35■□□□□ 0.85
Nubp1Q9R060 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
Nubp1Q9R060 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Nubp1Q9R060 Galnt12-201ENSMUST00000045041 2288 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nubp1Q9R060 Gm5067-201ENSMUST00000170449 1009 ntBASIC20.34■□□□□ 0.85
Nubp1Q9R060 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Nubp1Q9R060 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
Nubp1Q9R060 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
Nubp1Q9R060 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nubp1Q9R060 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Nubp1Q9R060 Gm27502-201ENSMUST00000183495 199 ntBASIC20.33■□□□□ 0.85
Nubp1Q9R060 Gm45364-201ENSMUST00000210883 159 ntBASIC20.33■□□□□ 0.85
Nubp1Q9R060 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Nubp1Q9R060 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC20.32■□□□□ 0.84
Nubp1Q9R060 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC20.32■□□□□ 0.84
Nubp1Q9R060 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Nubp1Q9R060 Pfn2-202ENSMUST00000119344 1879 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Nubp1Q9R060 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
Nubp1Q9R060 Gm5921-201ENSMUST00000075898 882 ntBASIC20.31■□□□□ 0.84
Nubp1Q9R060 Gm9905-201ENSMUST00000065740 1845 ntBASIC20.31■□□□□ 0.84
Nubp1Q9R060 Dazap1-203ENSMUST00000105362 2081 ntAPPRIS P3 TSL 1 (best) BASIC20.31■□□□□ 0.84
Nubp1Q9R060 Gm13889-201ENSMUST00000099689 1386 ntBASIC20.3■□□□□ 0.84
Nubp1Q9R060 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.29■□□□□ 0.84
Nubp1Q9R060 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Nubp1Q9R060 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
Nubp1Q9R060 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nubp1Q9R060 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Nubp1Q9R060 Tmem55b-206ENSMUST00000161166 1445 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
Nubp1Q9R060 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Nubp1Q9R060 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nubp1Q9R060 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Nubp1Q9R060 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Nubp1Q9R060 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 53 ms