Protein–RNA interactions for Protein: Q9CZQ6

Raet1e, Retinoic acid early-inducible protein 1-epsilon, mousemouse

Predictions only

Length 251 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Raet1eQ9CZQ6 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Raet1eQ9CZQ6 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Raet1eQ9CZQ6 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Raet1eQ9CZQ6 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC20.74■□□□□ 0.91
Raet1eQ9CZQ6 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Raet1eQ9CZQ6 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
Raet1eQ9CZQ6 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Raet1eQ9CZQ6 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Raet1eQ9CZQ6 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC20.72■□□□□ 0.91
Raet1eQ9CZQ6 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Raet1eQ9CZQ6 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Raet1eQ9CZQ6 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC20.72■□□□□ 0.91
Raet1eQ9CZQ6 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Raet1eQ9CZQ6 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Raet1eQ9CZQ6 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Raet1eQ9CZQ6 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Raet1eQ9CZQ6 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC20.7■□□□□ 0.9
Raet1eQ9CZQ6 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC20.7■□□□□ 0.9
Raet1eQ9CZQ6 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Raet1eQ9CZQ6 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Raet1eQ9CZQ6 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Raet1eQ9CZQ6 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Raet1eQ9CZQ6 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Raet1eQ9CZQ6 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Raet1eQ9CZQ6 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Raet1eQ9CZQ6 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Raet1eQ9CZQ6 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
Raet1eQ9CZQ6 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Raet1eQ9CZQ6 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC20.67■□□□□ 0.9
Raet1eQ9CZQ6 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
Raet1eQ9CZQ6 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Raet1eQ9CZQ6 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Raet1eQ9CZQ6 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Raet1eQ9CZQ6 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
Raet1eQ9CZQ6 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Raet1eQ9CZQ6 Fxyd1-205ENSMUST00000205439 535 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Raet1eQ9CZQ6 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Raet1eQ9CZQ6 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC20.64■□□□□ 0.89
Raet1eQ9CZQ6 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
Raet1eQ9CZQ6 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Raet1eQ9CZQ6 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Raet1eQ9CZQ6 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Raet1eQ9CZQ6 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
Raet1eQ9CZQ6 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Raet1eQ9CZQ6 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
Raet1eQ9CZQ6 Smurf1-203ENSMUST00000110677 5420 ntTSL 5 BASIC20.62■□□□□ 0.89
Raet1eQ9CZQ6 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
Raet1eQ9CZQ6 Foxk2-201ENSMUST00000106113 5029 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Raet1eQ9CZQ6 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Raet1eQ9CZQ6 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Raet1eQ9CZQ6 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Raet1eQ9CZQ6 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Raet1eQ9CZQ6 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Raet1eQ9CZQ6 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Raet1eQ9CZQ6 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Raet1eQ9CZQ6 Habp4-201ENSMUST00000021929 2564 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Raet1eQ9CZQ6 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Raet1eQ9CZQ6 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Raet1eQ9CZQ6 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Raet1eQ9CZQ6 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
Raet1eQ9CZQ6 Mapk15-201ENSMUST00000089669 1929 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Raet1eQ9CZQ6 Homer3-202ENSMUST00000087467 880 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Raet1eQ9CZQ6 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Raet1eQ9CZQ6 P3h3-201ENSMUST00000023958 2850 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Raet1eQ9CZQ6 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Raet1eQ9CZQ6 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC20.56■□□□□ 0.88
Raet1eQ9CZQ6 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Raet1eQ9CZQ6 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Raet1eQ9CZQ6 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Raet1eQ9CZQ6 Gm26115-201ENSMUST00000175605 87 ntBASIC20.55■□□□□ 0.88
Raet1eQ9CZQ6 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Raet1eQ9CZQ6 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Raet1eQ9CZQ6 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC20.53■□□□□ 0.88
Raet1eQ9CZQ6 Txnrd1-208ENSMUST00000219962 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Raet1eQ9CZQ6 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Raet1eQ9CZQ6 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Raet1eQ9CZQ6 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Raet1eQ9CZQ6 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
Raet1eQ9CZQ6 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Raet1eQ9CZQ6 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC20.52■□□□□ 0.87
Raet1eQ9CZQ6 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC20.51■□□□□ 0.87
Raet1eQ9CZQ6 Ccdc9-201ENSMUST00000041010 2379 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
Raet1eQ9CZQ6 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
Raet1eQ9CZQ6 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Raet1eQ9CZQ6 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
Raet1eQ9CZQ6 Igfbp3-201ENSMUST00000020702 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
Raet1eQ9CZQ6 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.5■□□□□ 0.87
Raet1eQ9CZQ6 Otud5-204ENSMUST00000115667 2708 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
Raet1eQ9CZQ6 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Raet1eQ9CZQ6 Lsr-201ENSMUST00000001279 2167 ntAPPRIS P3 TSL 1 (best) BASIC20.49■□□□□ 0.87
Raet1eQ9CZQ6 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Raet1eQ9CZQ6 Luc7l3-203ENSMUST00000107821 2050 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
Raet1eQ9CZQ6 Ubac1-201ENSMUST00000036509 1852 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Raet1eQ9CZQ6 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC20.49■□□□□ 0.87
Raet1eQ9CZQ6 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Raet1eQ9CZQ6 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC20.48■□□□□ 0.87
Raet1eQ9CZQ6 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Raet1eQ9CZQ6 Traf3ip1-203ENSMUST00000189341 2257 ntAPPRIS ALT2 TSL 5 BASIC20.48■□□□□ 0.87
Raet1eQ9CZQ6 Hgh1-201ENSMUST00000023213 1959 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Raet1eQ9CZQ6 Ctnnd2-201ENSMUST00000081728 5944 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms