Protein–RNA interactions for Protein: Q8K4Z5

Sf3a1, Splicing factor 3A subunit 1, mousemouse

Known RBP Predictions only

Length 791 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sf3a1Q8K4Z5 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC28.9■■■□□ 2.22
Sf3a1Q8K4Z5 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC28.89■■■□□ 2.22
Sf3a1Q8K4Z5 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC28.89■■■□□ 2.21
Sf3a1Q8K4Z5 1110065P20Rik-201ENSMUST00000106190 968 ntAPPRIS P1 TSL 2 BASIC28.88■■■□□ 2.21
Sf3a1Q8K4Z5 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC28.88■■■□□ 2.21
Sf3a1Q8K4Z5 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC28.87■■■□□ 2.21
Sf3a1Q8K4Z5 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC28.86■■■□□ 2.21
Sf3a1Q8K4Z5 Flt3l-211ENSMUST00000211429 1358 ntAPPRIS ALT2 TSL 1 (best) BASIC28.86■■■□□ 2.21
Sf3a1Q8K4Z5 Gfra4-203ENSMUST00000110234 600 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Sf3a1Q8K4Z5 Gfra4-204ENSMUST00000110235 573 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Sf3a1Q8K4Z5 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC28.85■■■□□ 2.21
Sf3a1Q8K4Z5 Ppa2-201ENSMUST00000029644 1226 ntAPPRIS P3 TSL 1 (best) BASIC28.84■■■□□ 2.21
Sf3a1Q8K4Z5 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
Sf3a1Q8K4Z5 Ankrd28-201ENSMUST00000014640 6712 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
Sf3a1Q8K4Z5 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Sf3a1Q8K4Z5 Gnaq-201ENSMUST00000025541 5644 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
Sf3a1Q8K4Z5 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
Sf3a1Q8K4Z5 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
Sf3a1Q8K4Z5 Dtnbp1-202ENSMUST00000110128 1305 ntAPPRIS ALT2 TSL 5 BASIC28.79■■■□□ 2.2
Sf3a1Q8K4Z5 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Sf3a1Q8K4Z5 A030003K21Rik-201ENSMUST00000222600 830 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
Sf3a1Q8K4Z5 Otulin-201ENSMUST00000059662 1491 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
Sf3a1Q8K4Z5 1700084E18Rik-202ENSMUST00000205624 729 ntBASIC28.77■■■□□ 2.2
Sf3a1Q8K4Z5 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC28.75■■■□□ 2.19
Sf3a1Q8K4Z5 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Sf3a1Q8K4Z5 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
Sf3a1Q8K4Z5 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC28.74■■■□□ 2.19
Sf3a1Q8K4Z5 Rcor3-207ENSMUST00000192866 1844 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
Sf3a1Q8K4Z5 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC28.73■■■□□ 2.19
Sf3a1Q8K4Z5 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Sf3a1Q8K4Z5 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC28.72■■■□□ 2.19
Sf3a1Q8K4Z5 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
Sf3a1Q8K4Z5 Mtor-201ENSMUST00000057580 1003 ntTSL 1 (best) BASIC28.72■■■□□ 2.19
Sf3a1Q8K4Z5 Stradb-202ENSMUST00000114296 1348 ntTSL 1 (best) BASIC28.71■■■□□ 2.19
Sf3a1Q8K4Z5 Plin1-206ENSMUST00000205915 2817 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Sf3a1Q8K4Z5 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
Sf3a1Q8K4Z5 Snrpe-202ENSMUST00000164574 597 ntTSL 3 BASIC28.71■■■□□ 2.19
Sf3a1Q8K4Z5 Gm27021-201ENSMUST00000181333 758 ntAPPRIS P1 TSL 4 BASIC28.71■■■□□ 2.19
Sf3a1Q8K4Z5 Particl-201ENSMUST00000205370 1560 ntBASIC28.71■■■□□ 2.19
Sf3a1Q8K4Z5 Irf2bp2-201ENSMUST00000054960 5080 ntAPPRIS P1 TSL 2 BASIC28.71■■■□□ 2.19
Sf3a1Q8K4Z5 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Sf3a1Q8K4Z5 Hspb1-202ENSMUST00000111155 930 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
Sf3a1Q8K4Z5 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC28.68■■■□□ 2.18
Sf3a1Q8K4Z5 C130046K22Rik-201ENSMUST00000129780 727 ntTSL 5 BASIC28.68■■■□□ 2.18
Sf3a1Q8K4Z5 Gm7432-201ENSMUST00000210343 879 ntBASIC28.68■■■□□ 2.18
Sf3a1Q8K4Z5 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC28.68■■■□□ 2.18
Sf3a1Q8K4Z5 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
Sf3a1Q8K4Z5 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC28.67■■■□□ 2.18
Sf3a1Q8K4Z5 Bcl7b-202ENSMUST00000111187 564 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
Sf3a1Q8K4Z5 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
Sf3a1Q8K4Z5 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Sf3a1Q8K4Z5 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
Sf3a1Q8K4Z5 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
Sf3a1Q8K4Z5 C2cd4b-201ENSMUST00000171652 1327 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
Sf3a1Q8K4Z5 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
Sf3a1Q8K4Z5 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.17
Sf3a1Q8K4Z5 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Sf3a1Q8K4Z5 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC28.63■■■□□ 2.17
Sf3a1Q8K4Z5 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
Sf3a1Q8K4Z5 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
Sf3a1Q8K4Z5 AC131739.1-201ENSMUST00000221692 1245 ntBASIC28.62■■■□□ 2.17
Sf3a1Q8K4Z5 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC28.62■■■□□ 2.17
Sf3a1Q8K4Z5 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC28.62■■■□□ 2.17
Sf3a1Q8K4Z5 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC28.61■■■□□ 2.17
Sf3a1Q8K4Z5 Gm15156-201ENSMUST00000148217 417 ntTSL 3 BASIC28.61■■■□□ 2.17
Sf3a1Q8K4Z5 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
Sf3a1Q8K4Z5 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC28.6■■■□□ 2.17
Sf3a1Q8K4Z5 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
Sf3a1Q8K4Z5 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC28.6■■■□□ 2.17
Sf3a1Q8K4Z5 Gm37847-201ENSMUST00000192163 1497 ntBASIC28.59■■■□□ 2.17
Sf3a1Q8K4Z5 Gm31748-201ENSMUST00000194938 1497 ntBASIC28.59■■■□□ 2.17
Sf3a1Q8K4Z5 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC28.58■■■□□ 2.17
Sf3a1Q8K4Z5 Rexo2-210ENSMUST00000217037 609 ntTSL 3 BASIC28.58■■■□□ 2.17
Sf3a1Q8K4Z5 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Sf3a1Q8K4Z5 Gm2018-201ENSMUST00000140754 478 ntTSL 2 BASIC28.57■■■□□ 2.16
Sf3a1Q8K4Z5 6330420H09Rik-201ENSMUST00000211371 1316 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
Sf3a1Q8K4Z5 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Sf3a1Q8K4Z5 1700003F12Rik-202ENSMUST00000109709 704 ntAPPRIS ALT2 TSL 3 BASIC28.56■■■□□ 2.16
Sf3a1Q8K4Z5 1700003F12Rik-201ENSMUST00000045116 704 ntAPPRIS P2 TSL 1 (best) BASIC28.56■■■□□ 2.16
Sf3a1Q8K4Z5 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Sf3a1Q8K4Z5 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Sf3a1Q8K4Z5 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC28.55■■■□□ 2.16
Sf3a1Q8K4Z5 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC28.55■■■□□ 2.16
Sf3a1Q8K4Z5 Gm11599-201ENSMUST00000118720 878 ntBASIC28.54■■■□□ 2.16
Sf3a1Q8K4Z5 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC28.54■■■□□ 2.16
Sf3a1Q8K4Z5 St6galnac6-204ENSMUST00000095045 2536 ntAPPRIS ALT1 TSL 1 (best) BASIC28.54■■■□□ 2.16
Sf3a1Q8K4Z5 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Sf3a1Q8K4Z5 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC28.53■■■□□ 2.16
Sf3a1Q8K4Z5 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC28.53■■■□□ 2.16
Sf3a1Q8K4Z5 Gm17110-201ENSMUST00000171248 735 ntTSL 3 BASIC28.53■■■□□ 2.16
Sf3a1Q8K4Z5 Gm37136-201ENSMUST00000194368 194 ntBASIC28.53■■■□□ 2.16
Sf3a1Q8K4Z5 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.53■■■□□ 2.16
Sf3a1Q8K4Z5 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.52■■■□□ 2.16
Sf3a1Q8K4Z5 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC28.51■■■□□ 2.16
Sf3a1Q8K4Z5 Ryk-201ENSMUST00000035142 2852 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
Sf3a1Q8K4Z5 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC28.51■■■□□ 2.15
Sf3a1Q8K4Z5 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Sf3a1Q8K4Z5 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC28.5■■■□□ 2.15
Sf3a1Q8K4Z5 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC28.49■■■□□ 2.15
Sf3a1Q8K4Z5 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC28.49■■■□□ 2.15
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms