Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx3P48381 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Rfx3P48381 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx3P48381 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Rfx3P48381 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Rfx3P48381 Ier5l-201ENSMUST00000065134 2683 ntAPPRIS P1 BASIC21.1■□□□□ 0.97
Rfx3P48381 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx3P48381 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx3P48381 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Rfx3P48381 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
Rfx3P48381 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx3P48381 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx3P48381 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx3P48381 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC21.07■□□□□ 0.96
Rfx3P48381 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx3P48381 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx3P48381 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx3P48381 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Rfx3P48381 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Rfx3P48381 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx3P48381 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx3P48381 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx3P48381 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx3P48381 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Rfx3P48381 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Rfx3P48381 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Rfx3P48381 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx3P48381 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx3P48381 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Rfx3P48381 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Rfx3P48381 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC21.03■□□□□ 0.96
Rfx3P48381 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Rfx3P48381 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Rfx3P48381 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Rfx3P48381 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC21■□□□□ 0.95
Rfx3P48381 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx3P48381 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx3P48381 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Rfx3P48381 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Rfx3P48381 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx3P48381 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
Rfx3P48381 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Rfx3P48381 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx3P48381 Camsap1-212ENSMUST00000183461 5090 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Rfx3P48381 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx3P48381 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx3P48381 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Rfx3P48381 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx3P48381 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx3P48381 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx3P48381 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Rfx3P48381 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC20.97■□□□□ 0.95
Rfx3P48381 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Rfx3P48381 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC20.96■□□□□ 0.95
Rfx3P48381 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC20.96■□□□□ 0.95
Rfx3P48381 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC20.96■□□□□ 0.95
Rfx3P48381 Cadm1-202ENSMUST00000085909 2126 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx3P48381 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Rfx3P48381 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx3P48381 2610307P16Rik-205ENSMUST00000148885 1870 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx3P48381 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
Rfx3P48381 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Rfx3P48381 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx3P48381 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx3P48381 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC20.94■□□□□ 0.94
Rfx3P48381 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx3P48381 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx3P48381 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx3P48381 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Rfx3P48381 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.93■□□□□ 0.94
Rfx3P48381 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Rfx3P48381 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx3P48381 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx3P48381 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Rfx3P48381 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
Rfx3P48381 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx3P48381 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Rfx3P48381 Fam204a-201ENSMUST00000065286 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx3P48381 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.9■□□□□ 0.94
Rfx3P48381 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx3P48381 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx3P48381 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx3P48381 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Rfx3P48381 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx3P48381 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx3P48381 St6galnac6-203ENSMUST00000095044 2394 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
Rfx3P48381 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx3P48381 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx3P48381 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Rfx3P48381 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
Rfx3P48381 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx3P48381 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
Rfx3P48381 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Rfx3P48381 AC122428.3-201ENSMUST00000215551 2290 ntBASIC20.87■□□□□ 0.93
Rfx3P48381 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.86■□□□□ 0.93
Rfx3P48381 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx3P48381 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx3P48381 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
Rfx3P48381 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
Rfx3P48381 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 88 ms