Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 GABRG2-228ENST00000640985 3086 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 VPS13B-203ENST00000358544 14094 ntAPPRIS P4 TSL 1 (best) BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 RNA5SP509-201ENST00000364577 119 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AL445189.1-201ENST00000405722 338 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 GAS5-208ENST00000425771 242 ntTSL 3 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 RPS27AP12-201ENST00000429552 465 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 RPL7P32-201ENST00000457119 744 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 snoU13.22-201ENST00000459428 104 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 STK26-205ENST00000496850 1186 ntTSL 1 (best) BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC018682.2-201ENST00000517716 399 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC006504.5-201ENST00000588122 655 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC100814.1-201ENST00000606963 623 ntBASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 OR8H1-202ENST00000610894 927 ntAPPRIS ALT1 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 AC092683.1-209ENST00000612970 1105 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 CCDC25-212ENST00000640944 261 ntTSL 5 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC9.34□□□□□ -0.91
SHROOM4Q9ULL8 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC9.34□□□□□ -0.92
SHROOM4Q9ULL8 PTPRT-202ENST00000373184 12483 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 MGAM2-201ENST00000477922 7867 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 CARF-208ENST00000428585 2513 ntTSL 2 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 MED12L-206ENST00000474524 10744 ntAPPRIS P2 TSL 1 (best) BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 DCC-202ENST00000412726 9525 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 PTPRT-201ENST00000356100 12480 ntAPPRIS ALT2 TSL 5 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 PTPRT-203ENST00000373187 12453 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 SNORA37-201ENST00000384504 129 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 U3.30-201ENST00000391308 210 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AL357515.1-201ENST00000402967 542 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 CEBPZOS-205ENST00000406711 687 ntAPPRIS P1 TSL 5 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AL356968.2-201ENST00000412769 1257 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AC244453.4-201ENST00000419150 388 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AC016831.4-201ENST00000438302 307 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 NPM1P33-201ENST00000438918 872 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 SCAND3P1-201ENST00000439854 1060 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AC000111.2-201ENST00000448200 210 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 BX842559.2-201ENST00000451418 605 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 RPS17P2-201ENST00000461663 408 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 RNU4ATAC18P-201ENST00000516179 126 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AC023389.2-201ENST00000580031 955 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AC245389.1-201ENST00000605141 529 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 AC010894.2-203ENST00000606406 499 ntTSL 3 BASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 OFD1P9Y-201ENST00000417699 1491 ntBASIC9.33□□□□□ -0.92
SHROOM4Q9ULL8 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 NR3C2-202ENST00000344721 5712 ntAPPRIS P1 TSL 5 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 FRYL-209ENST00000506685 1940 ntTSL 5 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 TBCAP2-201ENST00000416175 326 ntBASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 AC068413.1-201ENST00000517739 776 ntTSL 5 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 PTER-201ENST00000298942 3448 ntTSL 5 BASIC9.32□□□□□ -0.92
SHROOM4Q9ULL8 LRRC49-204ENST00000544974 6605 ntTSL 2 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 MSL3P1-202ENST00000440028 1468 ntBASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 SLC28A3-201ENST00000376238 4887 ntAPPRIS P1 TSL 1 (best) BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 RNU6-819P-201ENST00000364116 107 ntBASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 LRRC37BP1-201ENST00000398851 714 ntBASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 AL353801.1-201ENST00000425541 425 ntTSL 3 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 AC009238.2-201ENST00000431026 355 ntBASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 AC116562.1-201ENST00000485355 781 ntBASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 AC087379.1-201ENST00000524613 993 ntTSL 5 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 AC115286.1-201ENST00000604298 434 ntBASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 ADGRL2-222ENST00000627151 5789 ntTSL 5 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 MYBPC1-202ENST00000361685 3871 ntAPPRIS ALT2 TSL 1 (best) BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC9.31□□□□□ -0.92
SHROOM4Q9ULL8 AC092111.2-201ENST00000611627 1414 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AC018628.1-201ENST00000624147 3819 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 MLH3-202ENST00000380968 7819 ntTSL 1 (best) BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 OR4K17-201ENST00000315543 1032 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 RNU6-697P-201ENST00000363348 107 ntBASIC9.3□□□□□ -0.92
SHROOM4Q9ULL8 AL672277.1-201ENST00000420865 588 ntTSL 2 BASIC9.3□□□□□ -0.92
Retrieved 100 of 98,524 protein–RNA pairs in 75.9 ms