Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC011374.2-201ENST00000607135 526 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC013476.2-201ENST00000614456 459 ntBASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AF067845.4-201ENST00000633198 480 ntTSL 3 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 LINC01359-206ENST00000634775 888 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 HHLA2-206ENST00000467761 2379 ntAPPRIS P3 TSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 OR5M3-202ENST00000641993 1400 ntAPPRIS P1 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 IFT52-202ENST00000373039 1599 ntAPPRIS P1 TSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 RFC1-201ENST00000349703 4859 ntAPPRIS P3 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 RFC1-202ENST00000381897 4886 ntAPPRIS ALT2 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 ZNF780A-205ENST00000594395 2044 ntAPPRIS ALT2 TSL 2 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 CLEC12B-202ENST00000396502 3029 ntTSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 ZNF192P1-201ENST00000440790 1628 ntTSL 5 BASIC6.98□□□□□ -1.29
CCDC39Q9UFE4 AC114774.1-201ENST00000507410 1770 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 DZIP3-202ENST00000463306 4246 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC005261.2-201ENST00000593427 4258 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AP000473.2-201ENST00000602659 1537 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 LINC02421-201ENST00000542219 3135 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 ZBTB38-222ENST00000637056 6056 ntAPPRIS P1 TSL 5 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 NOX4-205ENST00000424319 4184 ntTSL 5 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 SPATA6-202ENST00000371843 2297 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 BCORP1-203ENST00000513194 5093 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 RN7SKP184-201ENST00000362348 333 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 RNA5SP346-201ENST00000363541 121 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 Y_RNA.560-201ENST00000384689 102 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 SNORA26.8-201ENST00000391306 124 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 BTF3P7-201ENST00000407097 488 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 RN7SKP144-201ENST00000411108 279 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AL445183.3-201ENST00000414168 502 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AL138733.1-201ENST00000415477 853 ntTSL 5 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 LINC01728-201ENST00000428529 524 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 ARMC4P1-201ENST00000438905 707 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 RPL12P49-201ENST00000441100 121 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 SUN3-208ENST00000453192 801 ntTSL 5 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC093157.1-204ENST00000454721 753 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 HBBP1-202ENST00000454892 455 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 CFTRP1-201ENST00000456646 183 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 RN7SL552P-201ENST00000462094 276 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AL035454.1-201ENST00000470758 433 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC087071.2-201ENST00000483283 575 ntTSL 4 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 LINC01322-202ENST00000494915 594 ntTSL 4 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 LINC01596-201ENST00000503609 592 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 DSTNP2-201ENST00000504533 515 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 PRELID3BP4-201ENST00000515476 571 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 Y_RNA.710-201ENST00000516975 110 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 MTCYBP19-201ENST00000517463 1124 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 OR5D2P-201ENST00000524390 911 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC090791.1-201ENST00000530960 492 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 CLEC2B-202ENST00000538152 745 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 SERPINB7-206ENST00000540675 2193 ntTSL 2 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 G2E3-AS1-201ENST00000548631 579 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC013437.1-201ENST00000549878 414 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC021483.2-201ENST00000567415 758 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC135050.4-201ENST00000568708 504 ntTSL 5 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 GARSP1-201ENST00000570895 719 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 RBM22P1-201ENST00000578589 1214 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC020916.2-201ENST00000591242 360 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC008750.7-201ENST00000600765 559 ntTSL 4 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC018618.2-201ENST00000604770 446 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 HMGB1P51-201ENST00000605166 638 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AL591167.1-201ENST00000607321 456 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 DLEU2_1.1-201ENST00000612089 120 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 DLEU2_1.2-201ENST00000614667 120 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 FBXO8-205ENST00000615392 1591 ntTSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 AC099654.14-201ENST00000638599 341 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 SAMMSON-209ENST00000641222 1100 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 CRB1-203ENST00000367400 4932 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 NFE2L2-206ENST00000446151 2399 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 ZNF610-208ENST00000613461 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 ZNF833P-201ENST00000424938 1494 ntBASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 C2CD6-201ENST00000286195 2104 ntAPPRIS P3 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 ASAH2-202ENST00000395526 6880 ntAPPRIS P1 TSL 1 (best) BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 ZNF254-208ENST00000616028 3886 ntTSL 4 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 CRNDE-212ENST00000613942 2601 ntTSL 5 BASIC6.97□□□□□ -1.29
CCDC39Q9UFE4 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.96□□□□□ -1.29
CCDC39Q9UFE4 VPS50-220ENST00000544910 5736 ntTSL 2 BASIC6.96□□□□□ -1.29
CCDC39Q9UFE4 RPL6-201ENST00000202773 947 ntAPPRIS P1 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 RNU5B-1-201ENST00000363286 116 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AL626787.1-201ENST00000366136 594 ntTSL 4 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 OR51F1-201ENST00000380383 960 ntAPPRIS P5 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 MT-TH-201ENST00000387441 69 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AL034417.1-201ENST00000399343 800 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 NPM1P38-201ENST00000403835 865 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 LINC01058-201ENST00000420694 448 ntTSL 5 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 Z82198.3-201ENST00000421145 199 ntBASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 AC137630.2-202ENST00000429681 555 ntTSL 3 BASIC6.96□□□□□ -1.3
CCDC39Q9UFE4 MTND1P32-201ENST00000433043 938 ntBASIC6.96□□□□□ -1.3
Retrieved 100 of 98,524 protein–RNA pairs in 79.3 ms