Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 AL359853.3-201ENST00000423879 544 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 YY1P1-201ENST00000427625 668 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 Z85994.2-201ENST00000434327 452 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC012442.1-201ENST00000436885 529 ntTSL 4 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 SNRPFP2-201ENST00000440710 251 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 RAD1P2-201ENST00000446414 663 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 KNOP1P3-201ENST00000446933 426 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC004980.3-201ENST00000447046 365 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 CLEC2A-202ENST00000455827 916 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC011287.2-201ENST00000456809 842 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC090114.3-201ENST00000479267 829 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 HMGN2P25-201ENST00000486956 268 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 RNA5SP303-201ENST00000516192 130 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AL121839.1-201ENST00000556233 1185 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 NDUFB4P11-201ENST00000560510 395 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC006116.3-201ENST00000592968 361 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 BNIP3P7-201ENST00000605641 516 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC018695.5-201ENST00000605872 315 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC034238.1-215ENST00000609792 219 ntTSL 5 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AL121612.2-201ENST00000612261 482 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC020658.4-201ENST00000613987 684 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 AP001005.3-201ENST00000622049 129 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 LEUTX-202ENST00000638280 667 ntAPPRIS P1 TSL 3 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 LINC01739-205ENST00000641890 573 ntBASIC4.45□□□□□ -1.7
SKA3Q8IX90 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 FILIP1-203ENST00000393004 7807 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 MAPK10-208ENST00000395169 4049 ntTSL 1 (best) BASIC4.45□□□□□ -1.7
SKA3Q8IX90 NPY5R-202ENST00000506953 1418 ntAPPRIS P1 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC104793.1-201ENST00000508189 2840 ntTSL 2 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.45□□□□□ -1.7
SKA3Q8IX90 ZFHX4-207ENST00000521891 14019 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 DNAH8-201ENST00000327475 14360 ntAPPRIS P2 TSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 GLIPR1-201ENST00000266659 5877 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SKA3Q8IX90 CRISP1-201ENST00000329411 1709 ntTSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC005332.5-201ENST00000591222 2919 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 ASB14-202ENST00000487349 3179 ntAPPRIS P2 TSL 1 (best) BASIC4.44□□□□□ -1.7
SKA3Q8IX90 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SKA3Q8IX90 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 OR1L3-201ENST00000304820 1118 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 SNURFL-201ENST00000309296 343 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 ARGLU1-202ENST00000375926 821 ntAPPRIS P1 TSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 GLS-203ENST00000409215 632 ntTSL 4 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC093158.1-201ENST00000415549 791 ntTSL 3 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AL158837.1-201ENST00000417644 452 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC004690.1-201ENST00000418216 328 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 PTP4A1P1-201ENST00000420539 515 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AL354956.1-201ENST00000424487 467 ntTSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 MAPRE1P3-201ENST00000435438 796 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC018467.1-203ENST00000440785 506 ntTSL 3 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC098583.1-201ENST00000480875 255 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 RN7SL441P-201ENST00000492388 296 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 TM4SF1-AS1-202ENST00000496491 754 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC010350.1-201ENST00000504908 231 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC093763.2-201ENST00000505334 1223 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 SNORA48.9-201ENST00000516419 162 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 RN7SKP66-201ENST00000516681 231 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 RN7SKP260-201ENST00000516907 149 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 DERA-209ENST00000532964 854 ntTSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC092490.3-201ENST00000545370 572 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC125612.1-201ENST00000547580 377 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC018552.1-201ENST00000562099 811 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 RN7SL176P-201ENST00000580352 264 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC006116.4-201ENST00000589671 452 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC105254.2-201ENST00000603636 436 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 BX664718.1-201ENST00000439824 3224 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 LDHAL6CP-202ENST00000550738 3224 ntBASIC4.44□□□□□ -1.7
SKA3Q8IX90 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 WDR5B-201ENST00000330689 3720 ntAPPRIS P1 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SKA3Q8IX90 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SKA3Q8IX90 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 ATP2C1-205ENST00000504381 3498 ntTSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 N4BP2L2-201ENST00000267068 9427 ntAPPRIS P1 TSL 1 (best) BASIC4.44□□□□□ -1.7
SKA3Q8IX90 STARD4-201ENST00000296632 4606 ntAPPRIS P1 TSL 2 BASIC4.44□□□□□ -1.7
SKA3Q8IX90 ATP8B4-201ENST00000284509 5676 ntAPPRIS P1 TSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 NXF4-202ENST00000416098 1465 ntBASIC4.43□□□□□ -1.7
SKA3Q8IX90 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 MAPK10-353ENST00000641803 8483 ntAPPRIS P2 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 SMG1P3-204ENST00000520823 3194 ntTSL 5 BASIC4.43□□□□□ -1.7
SKA3Q8IX90 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
SKA3Q8IX90 THAP12P4-201ENST00000528321 2266 ntBASIC4.43□□□□□ -1.7
Retrieved 100 of 98,524 protein–RNA pairs in 117.5 ms