Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SEC31A-226ENST00000508479 3397 ntTSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 TRPC4-202ENST00000355779 2784 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 TRPC4-204ENST00000379673 2760 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 ZNF431-201ENST00000311048 13894 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC5.27□□□□□ -1.57
COL28A1Q2UY09 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 YPEL5-204ENST00000402003 2197 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CSNK1G3-205ENST00000510842 1979 ntAPPRIS ALT2 TSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 RNA5SP123-201ENST00000363244 119 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CFHR4-203ENST00000367418 1066 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 RNU4-27P-201ENST00000410889 139 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AL590806.1-201ENST00000415818 853 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AL590432.1-201ENST00000420071 566 ntTSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC074011.1-201ENST00000431376 581 ntTSL 4 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 KCNIP1-205ENST00000434108 726 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 ATP5J-207ENST00000457143 589 ntTSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC107015.1-201ENST00000466902 747 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 RN7SL197P-201ENST00000466981 299 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 RN7SL354P-201ENST00000469282 294 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC090114.3-201ENST00000479267 829 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 RN7SL591P-201ENST00000496150 292 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 EPPIN-WFDC6-201ENST00000504988 1156 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC121161.1-201ENST00000510606 652 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 RNU6-334P-201ENST00000517072 102 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 HAUS1P3-201ENST00000523909 662 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CASP1-206ENST00000526568 1061 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CASP1-216ENST00000534497 825 ntTSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC092490.3-201ENST00000545370 572 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC090109.1-201ENST00000548885 819 ntTSL 3 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC020661.4-201ENST00000561388 500 ntTSL 3 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC016839.1-201ENST00000578162 867 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 BNIP3P33-201ENST00000598912 569 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC012616.1-201ENST00000600294 197 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC068790.4-201ENST00000602474 263 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC112503.2-201ENST00000609005 552 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AL353770.4-201ENST00000614936 468 ntTSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AL590491.2-203ENST00000614969 468 ntTSL 4 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AL118522.2-201ENST00000616045 615 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CCL4L2-215ENST00000620055 537 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CCL4-203ENST00000621626 552 ntTSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC015660.5-201ENST00000623238 564 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 SNHG5-221ENST00000624295 632 ntTSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 LINC00836-203ENST00000628620 1179 ntTSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 OR8B2-202ENST00000641451 1056 ntAPPRIS P1 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 SENP8-202ENST00000542035 1672 ntAPPRIS P1 TSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 AC009962.1-201ENST00000567327 3813 ntBASIC5.26□□□□□ -1.57
COL28A1Q2UY09 LINC01630-202ENST00000578152 3188 ntTSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.26□□□□□ -1.57
COL28A1Q2UY09 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AL158152.1-201ENST00000602652 1435 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 CFL2-201ENST00000298159 6747 ntAPPRIS P1 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RBMX-203ENST00000431446 2004 ntTSL 2 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 CDON-206ENST00000531738 5803 ntTSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 HSPA8P19-201ENST00000505359 1517 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RN7SKP104-201ENST00000362605 328 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 ASXL1-203ENST00000375689 812 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RNU6-398P-201ENST00000384143 109 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RNA5SP91-201ENST00000390902 119 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RNA5SP339-201ENST00000390987 122 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC104297.1-201ENST00000393779 870 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RPL11P3-201ENST00000395256 523 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 DNAJA1P4-201ENST00000406473 1166 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AL355143.1-201ENST00000407101 841 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RNU2-17P-201ENST00000410290 190 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 MTND2P15-201ENST00000418575 892 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 CYP4F29P-201ENST00000420685 446 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 BX470102.1-201ENST00000420695 531 ntTSL 2 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 MTND2P9-201ENST00000422293 931 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 MTCO2P1-201ENST00000424648 477 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 VN1R21P-201ENST00000426703 765 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AL133268.3-201ENST00000428903 577 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 LINC01967-202ENST00000437506 515 ntTSL 5 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC012368.1-201ENST00000438115 552 ntTSL 3 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 MEMO1P4-201ENST00000453590 386 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RPL12P39-201ENST00000455456 496 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 RPL32P14-201ENST00000463196 378 ntBASIC5.25□□□□□ -1.57
COL28A1Q2UY09 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC5.25□□□□□ -1.57
COL28A1Q2UY09 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC5.25□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms