Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 NDUFA5P11-201ENST00000567995 343 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXA1P49639 ARGFXP2-201ENST00000579304 949 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC005244.1-201ENST00000582566 339 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC012313.4-201ENST00000596296 495 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC096553.1-201ENST00000605169 829 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 FAM27E4-201ENST00000605259 342 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC091769.2-201ENST00000605385 479 ntTSL 4 BASIC4.55□□□□□ -1.68
HOXA1P49639 AL139124.1-201ENST00000609123 421 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC015819.1-201ENST00000613588 663 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 SERPINB10-204ENST00000619595 1194 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 AL031665.2-201ENST00000620712 209 ntTSL 3 BASIC4.55□□□□□ -1.68
HOXA1P49639 MIR6813-201ENST00000621638 56 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AL136228.1-201ENST00000622221 319 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC006963.1-201ENST00000624003 1052 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC067931.1-201ENST00000624190 671 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 AC008691.1-209ENST00000642094 814 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 SYT16-205ENST00000568344 13978 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 STAG2-205ENST00000371160 6045 ntAPPRIS P3 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA1P49639 MYCT1-201ENST00000367245 3030 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 AC010099.4-201ENST00000424515 1453 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA1P49639 AC007342.7-201ENST00000624610 2337 ntBASIC4.55□□□□□ -1.68
HOXA1P49639 ADH4-207ENST00000505590 1400 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA1P49639 MGC32805-205ENST00000510972 1424 ntTSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 MYB-226ENST00000528774 2277 ntAPPRIS ALT1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 TEX9-209ENST00000561221 2297 ntTSL 5 BASIC4.55□□□□□ -1.68
HOXA1P49639 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC4.55□□□□□ -1.68
HOXA1P49639 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 MLH3-210ENST00000556257 4229 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 ZNF705D-202ENST00000400085 3377 ntAPPRIS P1 TSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 MECOM-217ENST00000494292 3939 ntAPPRIS ALT2 TSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 C2CD6-202ENST00000439140 5512 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 AC079097.1-201ENST00000512187 1399 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC112255.1-201ENST00000624070 2493 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 ARHGAP21-202ENST00000376410 3526 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 EEF1A1-211ENST00000615060 3508 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 LINC01748-204ENST00000635048 5678 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 GTDC1-203ENST00000392867 2408 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 OR2T7-202ENST00000641557 3409 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HOXA1P49639 CDH17-201ENST00000027335 3693 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 AC007382.1-201ENST00000624376 2618 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 IPO5-201ENST00000261574 6003 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 MAPK6PS2-201ENST00000379571 2060 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 SSX3-201ENST00000298396 1232 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC4.54□□□□□ -1.68
HOXA1P49639 TERB2-201ENST00000340827 1281 ntAPPRIS P1 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 CD84-205ENST00000368051 965 ntAPPRIS ALT2 TSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 AC117402.1-202ENST00000383686 820 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 RNU6-1263P-201ENST00000384601 106 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AF228730.1-201ENST00000397972 663 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 RN7SKP29-201ENST00000410957 272 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 ATG4AP1-201ENST00000416893 538 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AL449283.1-202ENST00000418249 604 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 RNF10P1-201ENST00000418589 369 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC093084.1-201ENST00000424233 687 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 MAGI2-AS3-204ENST00000426835 738 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA1P49639 MKLN1-204ENST00000429546 572 ntTSL 4 BASIC4.54□□□□□ -1.68
HOXA1P49639 LPP-AS1-201ENST00000434996 494 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA1P49639 GAPDHP59-201ENST00000435908 267 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AL138787.1-202ENST00000437804 898 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC024597.1-201ENST00000442753 706 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 AL358074.1-201ENST00000444800 509 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC005358.1-201ENST00000445508 1143 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 TIMM8BP2-201ENST00000445940 251 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC097463.1-201ENST00000447288 481 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AP000470.1-201ENST00000448063 693 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 RPL7P61-201ENST00000451721 751 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AL160408.1-203ENST00000453568 631 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC008280.2-201ENST00000455473 307 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 PSMC1P13-201ENST00000458195 985 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC078785.2-201ENST00000462010 1253 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC098818.1-201ENST00000478593 252 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 RPS3AP15-201ENST00000483874 781 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 RPL9P15-201ENST00000491096 532 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC105233.1-201ENST00000498840 781 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC112695.1-201ENST00000504213 592 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC020699.1-201ENST00000505161 445 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC112484.3-201ENST00000505910 329 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 RPS3A-204ENST00000506126 862 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 HMGB3P13-201ENST00000511263 607 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 AC022784.4-201ENST00000518589 422 ntTSL 1 (best) BASIC4.54□□□□□ -1.68
HOXA1P49639 AC025434.1-201ENST00000520705 460 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC4.54□□□□□ -1.68
HOXA1P49639 AP001978.1-201ENST00000526851 834 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC244502.1-203ENST00000541008 576 ntTSL 4 BASIC4.54□□□□□ -1.68
HOXA1P49639 CDKN3-206ENST00000541304 1070 ntTSL 2 BASIC4.54□□□□□ -1.68
HOXA1P49639 AC122688.1-201ENST00000541494 223 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 LRRC34P1-201ENST00000542742 915 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 LINC02329-201ENST00000554753 511 ntTSL 5 BASIC4.54□□□□□ -1.68
HOXA1P49639 RPA2P1-201ENST00000556557 721 ntBASIC4.54□□□□□ -1.68
HOXA1P49639 MTCYBP23-201ENST00000558717 1102 ntBASIC4.54□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 83.5 ms