Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC4.75□□□□□ -1.65
SOX3P41225 RN7SL826P-201ENST00000479724 288 ntBASIC4.75□□□□□ -1.65
SOX3P41225 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC4.75□□□□□ -1.65
SOX3P41225 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX3P41225 AC139718.2-201ENST00000506068 481 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX3P41225 MTND3P24-201ENST00000506306 329 ntBASIC4.75□□□□□ -1.65
SOX3P41225 AC008628.1-201ENST00000508663 265 ntBASIC4.75□□□□□ -1.65
SOX3P41225 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.75□□□□□ -1.65
SOX3P41225 RN7SKP147-201ENST00000517154 244 ntBASIC4.75□□□□□ -1.65
SOX3P41225 LINC02553-201ENST00000529088 734 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 DDHD2-219ENST00000529845 945 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.75□□□□□ -1.65
SOX3P41225 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.75□□□□□ -1.65
SOX3P41225 AC084200.1-201ENST00000547370 547 ntTSL 4 BASIC4.75□□□□□ -1.65
SOX3P41225 LINC02451-202ENST00000548764 579 ntTSL 4 BASIC4.75□□□□□ -1.65
SOX3P41225 AC011507.1-201ENST00000585364 567 ntTSL 4 BASIC4.75□□□□□ -1.65
SOX3P41225 AC135803.1-201ENST00000608748 565 ntBASIC4.75□□□□□ -1.65
SOX3P41225 AC006213.4-201ENST00000616184 634 ntBASIC4.75□□□□□ -1.65
SOX3P41225 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.75□□□□□ -1.65
SOX3P41225 AP000648.2-201ENST00000624182 404 ntBASIC4.75□□□□□ -1.65
SOX3P41225 AL731566.1-201ENST00000620490 1937 ntBASIC4.75□□□□□ -1.65
SOX3P41225 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 CRISP1-204ENST00000507853 1793 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 FAM135A-210ENST00000505868 5173 ntTSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 EIF1AY-201ENST00000361365 1390 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 AL512283.1-201ENST00000606756 1384 ntBASIC4.75□□□□□ -1.65
SOX3P41225 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
SOX3P41225 CCT6B-203ENST00000436961 1639 ntTSL 2 BASIC4.75□□□□□ -1.65
SOX3P41225 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC4.75□□□□□ -1.65
SOX3P41225 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC4.75□□□□□ -1.65
SOX3P41225 LCMT1-AS2-202ENST00000565214 5666 ntBASIC4.75□□□□□ -1.65
SOX3P41225 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.74□□□□□ -1.65
SOX3P41225 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 AC104260.2-201ENST00000623551 3497 ntBASIC4.74□□□□□ -1.65
SOX3P41225 PDE4B-201ENST00000329654 3998 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SOX3P41225 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SOX3P41225 LINC01568-202ENST00000555721 1325 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SOX3P41225 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.74□□□□□ -1.65
SOX3P41225 RN7SKP74-201ENST00000362849 309 ntBASIC4.74□□□□□ -1.65
SOX3P41225 MRRF-207ENST00000373729 870 ntTSL 3 BASIC4.74□□□□□ -1.65
SOX3P41225 AL589647.1-201ENST00000402485 466 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AL731575.1-201ENST00000413564 418 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 AC007738.1-201ENST00000413892 348 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.74□□□□□ -1.65
SOX3P41225 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 OR2AH1P-201ENST00000425717 928 ntBASIC4.74□□□□□ -1.65
SOX3P41225 RPL34P6-201ENST00000432390 345 ntBASIC4.74□□□□□ -1.65
SOX3P41225 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 SNRPFP2-201ENST00000440710 251 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC003991.1-205ENST00000447758 625 ntTSL 5 BASIC4.74□□□□□ -1.65
SOX3P41225 RNA5SP103-201ENST00000459503 118 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC020779.1-201ENST00000478757 796 ntBASIC4.74□□□□□ -1.65
SOX3P41225 MORC1-AS1-201ENST00000480826 564 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 AC000372.1-201ENST00000488818 646 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 SOX2-OT-216ENST00000497122 578 ntTSL 4 BASIC4.74□□□□□ -1.65
SOX3P41225 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.74□□□□□ -1.65
SOX3P41225 AC025768.1-201ENST00000510057 267 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC110775.1-201ENST00000513721 462 ntBASIC4.74□□□□□ -1.65
SOX3P41225 RN7SKP260-201ENST00000516907 149 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC067904.2-201ENST00000517322 1283 ntBASIC4.74□□□□□ -1.65
SOX3P41225 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 AF117829.1-209ENST00000523995 767 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 AP003049.1-201ENST00000529418 457 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC025263.2-201ENST00000550437 548 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
SOX3P41225 LINC01859-201ENST00000565584 1024 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
SOX3P41225 AC011840.5-201ENST00000582125 771 ntBASIC4.74□□□□□ -1.65
SOX3P41225 BNIP3P35-201ENST00000604530 490 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC067838.1-201ENST00000606064 577 ntBASIC4.74□□□□□ -1.65
SOX3P41225 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC4.74□□□□□ -1.65
SOX3P41225 AC093799.2-201ENST00000610062 578 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AL512506.1-201ENST00000613918 449 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AC079298.2-201ENST00000623885 459 ntBASIC4.74□□□□□ -1.65
SOX3P41225 AP001642.1-201ENST00000624727 2117 ntBASIC4.74□□□□□ -1.65
SOX3P41225 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SOX3P41225 LMNTD1-207ENST00000539744 1729 ntAPPRIS ALT2 TSL 1 (best) BASIC4.74□□□□□ -1.65
SOX3P41225 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC4.74□□□□□ -1.65
SOX3P41225 THAP12P4-201ENST00000528321 2266 ntBASIC4.74□□□□□ -1.65
SOX3P41225 LRP6-201ENST00000261349 10020 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 AC097512.1-201ENST00000511453 1309 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 INTU-201ENST00000335251 13233 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.73□□□□□ -1.65
SOX3P41225 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC4.73□□□□□ -1.65
SOX3P41225 HTR1F-201ENST00000319595 3140 ntAPPRIS P1 BASIC4.73□□□□□ -1.65
SOX3P41225 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 AC006210.2-201ENST00000367074 1545 ntBASIC4.73□□□□□ -1.65
SOX3P41225 CNGA1-202ENST00000402813 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 GABRG2-224ENST00000640574 3150 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 CLEC7A-203ENST00000310002 425 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
SOX3P41225 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.73□□□□□ -1.65
SOX3P41225 RNU6-1251P-201ENST00000364502 107 ntBASIC4.73□□□□□ -1.65
SOX3P41225 RNA5SP455-201ENST00000365190 119 ntBASIC4.73□□□□□ -1.65
SOX3P41225 SNORD51.1-201ENST00000365405 77 ntBASIC4.73□□□□□ -1.65
SOX3P41225 MRRF-203ENST00000373723 1176 ntTSL 3 BASIC4.73□□□□□ -1.65
SOX3P41225 UBBP2-201ENST00000376781 231 ntBASIC4.73□□□□□ -1.65
SOX3P41225 RNU6-40P-201ENST00000384254 107 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 74.6 ms