Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 GTF2IP22-201ENST00000554443 182 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC145350.2-201ENST00000561541 821 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 AC002519.2-203ENST00000567043 837 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 TMEM87A-212ENST00000568432 750 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 AC106785.4-201ENST00000569492 412 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC007786.1-202ENST00000590607 443 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 AP2S1-210ENST00000601649 315 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 AC112491.1-201ENST00000602890 248 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 AC009237.13-201ENST00000603193 276 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC009237.12-201ENST00000604755 742 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 RPSAP75-201ENST00000605848 301 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC024560.3-201ENST00000608482 349 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC109347.2-201ENST00000610220 349 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC005332.6-201ENST00000613178 446 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AL354718.1-201ENST00000619764 589 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 AC012414.7-202ENST00000622705 1090 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 LINC00836-201ENST00000625325 582 ntTSL 4 BASIC5.22□□□□□ -1.57
HOXA3O43365 AC019226.1-201ENST00000625666 515 ntBASIC5.22□□□□□ -1.57
HOXA3O43365 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 PDE4D-226ENST00000546160 7690 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 PSD3-219ENST00000614430 6136 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 STK32A-202ENST00000397936 5393 ntAPPRIS P1 TSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 IMPG1-201ENST00000369950 3558 ntAPPRIS P3 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 ZNF410-202ENST00000334521 2193 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 KCNIP4-201ENST00000359001 2168 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 PLCE1-201ENST00000371375 6514 ntAPPRIS ALT2 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 MYCBP2-212ENST00000612956 1542 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 OPRM1-206ENST00000419506 1402 ntTSL 1 (best) BASIC5.22□□□□□ -1.57
HOXA3O43365 LINC01378-201ENST00000422145 2516 ntTSL 3 BASIC5.22□□□□□ -1.57
HOXA3O43365 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.22□□□□□ -1.57
HOXA3O43365 RPL7L1-201ENST00000304734 3769 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA3O43365 DNAJC10-208ENST00000537515 1669 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA3O43365 TCF7L2-218ENST00000538897 4000 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA3O43365 ERMARD-202ENST00000366772 2003 ntTSL 5 BASIC5.21□□□□□ -1.57
HOXA3O43365 OAT-201ENST00000368845 2048 ntAPPRIS P1 TSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA3O43365 LINC00630-201ENST00000416381 2012 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA3O43365 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA3O43365 SP110-204ENST00000392048 1937 ntTSL 1 (best) BASIC5.21□□□□□ -1.57
HOXA3O43365 ZEB2-241ENST00000637304 9158 ntTSL 5 BASIC5.21□□□□□ -1.57
HOXA3O43365 OR10A6-204ENST00000642108 6104 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HOXA3O43365 FYB1-209ENST00000512982 2747 ntAPPRIS ALT2 TSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 MID1-209ENST00000453318 6393 ntAPPRIS P1 TSL 5 BASIC5.21□□□□□ -1.58
HOXA3O43365 BMPR1B-201ENST00000264568 1807 ntAPPRIS P1 TSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 DLEU7-AS1-201ENST00000413510 1806 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 STIL-203ENST00000371877 5009 ntAPPRIS ALT2 TSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 CASC19-248ENST00000641674 1356 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 TMC7-202ENST00000421369 4499 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 RNU6-1066P-201ENST00000363573 105 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 RNU6-374P-201ENST00000364146 108 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 RNU6-1283P-201ENST00000365314 105 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 RNA5SP122-201ENST00000384457 108 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AL133264.1-201ENST00000407157 562 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 RPL23AP47-201ENST00000408017 460 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 RNU4-64P-201ENST00000410795 131 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC068533.2-201ENST00000411872 306 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 OR8G2P-201ENST00000412796 908 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 RPL21P50-201ENST00000417698 477 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA3O43365 GNRHR-202ENST00000420975 859 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 IGKV3OR2-268-201ENST00000421835 350 ntAPPRIS P1 BASIC5.21□□□□□ -1.58
HOXA3O43365 AL121885.3-201ENST00000422833 115 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 AC007559.1-201ENST00000428736 355 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AL139415.2-201ENST00000431968 163 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 NEK4P1-201ENST00000433383 879 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 PCBP2P1-201ENST00000437262 977 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 LINC01013-203ENST00000443303 569 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 CXCR2P1-202ENST00000443392 1074 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 PRR16-203ENST00000446965 1152 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 AC073409.1-201ENST00000451749 269 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 PCBP1-AS1-237ENST00000452431 1194 ntTSL 4 BASIC5.21□□□□□ -1.58
HOXA3O43365 RBBP6-204ENST00000452655 854 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 DNAJC19P1-201ENST00000455312 319 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 Z83838.1-202ENST00000456225 839 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 VAMP3-202ENST00000470357 954 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 CREM-242ENST00000490511 469 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 AP002453.1-201ENST00000492327 668 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC096746.1-201ENST00000501965 1042 ntTSL 1 (best) BASIC5.21□□□□□ -1.58
HOXA3O43365 IGBP1P5-201ENST00000507524 1000 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 AC048346.1-201ENST00000510247 144 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 ZNF519P4-201ENST00000514008 125 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 LINC02055-205ENST00000521090 774 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 OR8G3P-201ENST00000533406 921 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AL133481.2-201ENST00000538322 367 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA3O43365 AC008055.1-201ENST00000547032 609 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AC007686.2-201ENST00000554043 469 ntTSL 2 BASIC5.21□□□□□ -1.58
HOXA3O43365 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 AL032819.1-201ENST00000568554 379 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 LINC01572-205ENST00000570152 360 ntTSL 3 BASIC5.21□□□□□ -1.58
HOXA3O43365 MTCO3P24-201ENST00000572729 782 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 ANKRD36BP2-206ENST00000575193 1245 ntBASIC5.21□□□□□ -1.58
HOXA3O43365 AL354740.1-205ENST00000586413 1230 ntTSL 5 BASIC5.21□□□□□ -1.58
HOXA3O43365 ZNF540-204ENST00000586792 564 ntTSL 3 BASIC5.21□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms