Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 TEX41-205ENST00000431734 529 ntTSL 4 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC023128.1-201ENST00000432431 799 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RPL19P16-201ENST00000433839 588 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RHOT1P3-201ENST00000436571 331 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 MTND2P40-201ENST00000436718 841 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 PRPF38AP2-201ENST00000438179 851 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 CEACAMP9-201ENST00000442990 513 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC016772.1-201ENST00000444170 1261 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 MED28P3-201ENST00000444288 531 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 VN1R48P-201ENST00000448149 1036 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 BUD31P2-201ENST00000449374 300 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 CBX1P2-201ENST00000453841 458 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC239798.3-201ENST00000454459 408 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 RPL7P41-201ENST00000485823 957 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC090833.1-202ENST00000511073 781 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC021193.1-201ENST00000511607 420 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC110288.1-201ENST00000517950 446 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 OR4V1P-201ENST00000525394 1140 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC008033.2-201ENST00000542626 177 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC092868.3-201ENST00000560515 784 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC022655.1-201ENST00000578039 288 ntTSL 3 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 MIR4330-201ENST00000579077 105 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 ABHD15-AS1-201ENST00000581474 187 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AP004372.1-201ENST00000604842 844 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AL022394.1-201ENST00000606979 292 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AL627230.1-201ENST00000613077 211 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AL591926.8-201ENST00000616876 211 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AP003499.2-201ENST00000624100 483 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC010266.2-201ENST00000564741 3255 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 CASC19-260ENST00000641828 2001 ntBASIC5.01□□□□□ -1.61
CCDC3Q9BQI4 AC012618.3-205ENST00000637896 1496 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 DPY19L2P2-203ENST00000435536 1858 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 PRG4-202ENST00000367483 4921 ntTSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC010127.1-209ENST00000447809 2305 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL450345.1-202ENST00000605741 3881 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 ATF7IP-209ENST00000536444 8774 ntAPPRIS ALT2 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 IRF5P1-201ENST00000504852 2164 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 OR6K3-202ENST00000368146 996 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 SNORD65-201ENST00000391079 73 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 GAPDHP15-201ENST00000398586 975 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 RN7SKP114-201ENST00000410327 279 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 BMS1P17-201ENST00000413661 723 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC096559.1-201ENST00000414086 399 ntTSL 2 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC079790.1-201ENST00000420365 507 ntTSL 3 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL357315.1-201ENST00000422930 254 ntTSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 USP9YP9-201ENST00000429406 715 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 RPL7AP49-201ENST00000429522 581 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL591438.1-201ENST00000433508 581 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC008072.1-201ENST00000434254 824 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC074367.1-201ENST00000438685 1125 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 FMR1-IT1-201ENST00000441414 343 ntTSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL161621.1-201ENST00000444796 340 ntTSL 3 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 KNOP1P3-201ENST00000446933 426 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL157884.3-201ENST00000448273 1184 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 GYG1P1-201ENST00000460864 698 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 RWDD4P1-201ENST00000488019 565 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 RPS12P31-201ENST00000491419 398 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 RN7SL244P-201ENST00000493405 297 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC006427.1-201ENST00000514359 712 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC064807.2-201ENST00000521188 672 ntTSL 3 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AP001804.2-201ENST00000533932 910 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC068643.1-201ENST00000548594 755 ntTSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 LINC02313-201ENST00000553330 550 ntTSL 2 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL139021.2-201ENST00000556390 399 ntTSL 3 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 PDCD6IPP2-207ENST00000566321 1069 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 MTND4LP25-201ENST00000570218 163 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 PPIAL4E-201ENST00000581164 785 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC092364.1-202ENST00000593824 565 ntTSL 4 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC008814.1-201ENST00000603797 406 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL162431.4-201ENST00000604674 411 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 RPL21P136-201ENST00000605378 396 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 LINC00458-206ENST00000607494 849 ntTSL 3 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AL356608.1-201ENST00000610034 820 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC073575.2-201ENST00000614212 627 ntBASIC5□□□□□ -1.61
CCDC3Q9BQI4 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 CCDC195-201ENST00000638102 606 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 AC110079.2-201ENST00000629462 1512 ntTSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 LGI1-202ENST00000371418 2381 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
CCDC3Q9BQI4 OR4F5-202ENST00000641515 2618 ntAPPRIS P1 BASIC5□□□□□ -1.61
CCDC3Q9BQI4 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 135.1 ms