Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC007996.1-201ENST00000620414 2821 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 NME5-201ENST00000265191 1198 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 SNORA70.6-201ENST00000383934 134 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 RNU1-74P-201ENST00000384108 171 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 SNORD65-201ENST00000391079 73 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 COX6B1P1-201ENST00000415962 213 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL360081.1-201ENST00000428299 555 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC092920.1-201ENST00000428516 678 ntTSL 5 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 GNGT1-203ENST00000429473 538 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL606490.7-201ENST00000433136 191 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC007563.3-201ENST00000433233 371 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL136987.1-201ENST00000434300 396 ntTSL 5 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 XKRY2-201ENST00000442362 1093 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL450344.2-201ENST00000455229 614 ntTSL 5 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 TPPP2-202ENST00000460647 568 ntTSL 3 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 RN7SL189P-201ENST00000468631 289 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 RPS29P22-201ENST00000472363 168 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC092957.1-201ENST00000473299 570 ntTSL 4 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC007686.1-201ENST00000488511 463 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 OR9N1P-202ENST00000494289 481 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC105233.1-201ENST00000498840 781 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC012055.1-201ENST00000511346 1144 ntTSL 3 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC016550.3-201ENST00000515706 767 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 RNA5SP228-201ENST00000516232 133 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 HMGB1P46-201ENST00000520062 610 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 OR7E128P-201ENST00000532736 1024 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC027176.2-201ENST00000559166 746 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC091117.1-201ENST00000560967 426 ntTSL 5 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 LINC02188-201ENST00000562064 550 ntTSL 4 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL390726.5-202ENST00000564800 256 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 C18orf32-202ENST00000582392 714 ntAPPRIS P1 TSL 3 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 BNIP3P19-201ENST00000605397 577 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC010632.3-201ENST00000611377 369 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL627230.1-201ENST00000613077 211 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AL591926.8-201ENST00000616876 211 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 ZNRD1ASP-221ENST00000637794 1074 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC011287.1-204ENST00000640300 1213 ntTSL 5 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC097063.1-201ENST00000426714 1797 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 VPS13C-204ENST00000395898 11012 ntAPPRIS ALT2 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 PCAT14-202ENST00000627127 3935 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 SUPT3H-203ENST00000371460 2389 ntAPPRIS P4 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 AC020633.1-201ENST00000468439 2247 ntBASIC5.51□□□□□ -1.53
USP41Q3LFD5 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.51□□□□□ -1.53
USP41Q3LFD5 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
USP41Q3LFD5 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 NSD1-202ENST00000354179 12195 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 AL158066.1-201ENST00000451298 3796 ntTSL 2 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 BNIP2-202ENST00000415213 1509 ntTSL 2 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 MTCO1P7-201ENST00000419523 1542 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP41Q3LFD5 KMT5B-215ENST00000615954 4306 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP41Q3LFD5 RN7SKP95-201ENST00000362860 303 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 RN7SKP149-201ENST00000363008 344 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 RPL10P10-201ENST00000403509 664 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 OR2AM1P-201ENST00000422137 422 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 TNKS2-AS1-201ENST00000432246 609 ntTSL 2 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 PRPF38AP2-201ENST00000438179 851 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AL359265.1-201ENST00000440296 795 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 TCEA1P3-201ENST00000443005 880 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC007655.1-201ENST00000444324 357 ntTSL 3 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC108161.1-201ENST00000461060 402 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 ABCC13-202ENST00000463099 3842 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC104831.1-201ENST00000470024 444 ntTSL 3 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 IGBP1P4-201ENST00000503202 879 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 MTCO1P31-201ENST00000506355 492 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC106806.2-201ENST00000509365 500 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 COX6B1P5-201ENST00000509843 249 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 LINC02505-203ENST00000515128 756 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC104009.1-203ENST00000531304 571 ntTSL 4 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 AP003557.1-201ENST00000531715 585 ntTSL 3 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC092451.2-201ENST00000538746 658 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 CR383656.6-201ENST00000550518 394 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC108738.1-201ENST00000603703 237 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC044839.1-205ENST00000614989 542 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 CC2D2B-209ENST00000618242 980 ntTSL 5 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 CCL14-204ENST00000622526 472 ntTSL 3 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 OR5AC4P-202ENST00000642086 985 ntBASIC5.5□□□□□ -1.53
USP41Q3LFD5 TRPM6-203ENST00000361255 8271 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP41Q3LFD5 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.5□□□□□ -1.53
USP41Q3LFD5 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC5.5□□□□□ -1.53
USP41Q3LFD5 NCOA1-206ENST00000407230 4745 ntTSL 1 (best) BASIC5.5□□□□□ -1.53
USP41Q3LFD5 CSNK1G3-210ENST00000521364 2580 ntAPPRIS ALT2 TSL 2 BASIC5.5□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 79.2 ms