Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNA5SP191-201ENST00000362585 102 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 SNORA74A-201ENST00000364089 198 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 RNA5SP151-201ENST00000365632 117 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC4.52□□□□□ -1.69
FOXA1P55317 RN7SKP167-201ENST00000411047 285 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 RBMY2QP-201ENST00000429799 1147 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 PPIAP13-201ENST00000434706 478 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 CYCSP11-201ENST00000436426 315 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 LINC02013-201ENST00000438156 526 ntTSL 2 BASIC4.52□□□□□ -1.69
FOXA1P55317 LINC01431-201ENST00000442440 514 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA1P55317 AC108463.1-201ENST00000450258 347 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 AC004815.1-201ENST00000484185 331 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 RPS4XP14-201ENST00000493072 781 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 TRIM36-IT1-201ENST00000503723 881 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA1P55317 AC026434.1-201ENST00000511474 454 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA1P55317 RNU1-6P-201ENST00000516290 144 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 CNTN5-209ENST00000528682 3800 ntAPPRIS P4 TSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 AC008033.2-201ENST00000542626 177 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 NOVA1-AS1-203ENST00000552101 468 ntTSL 3 BASIC4.52□□□□□ -1.69
FOXA1P55317 UBA52-209ENST00000597451 514 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 AC004232.3-201ENST00000622977 525 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 AC091905.4-201ENST00000623432 202 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 AP002799.1-201ENST00000623552 423 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 ADAMTS9-AS1-210ENST00000625328 699 ntTSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC4.52□□□□□ -1.69
FOXA1P55317 CASC19-204ENST00000641001 2055 ntBASIC4.52□□□□□ -1.69
FOXA1P55317 CNTN1-201ENST00000347616 5507 ntAPPRIS P1 TSL 1 (best) BASIC4.52□□□□□ -1.69
FOXA1P55317 AP001002.1-201ENST00000625148 1513 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 GABRA3-201ENST00000370314 3712 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC4.51□□□□□ -1.69
FOXA1P55317 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA1P55317 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 AC007382.1-201ENST00000624376 2618 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AC116158.1-201ENST00000560231 2129 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AC007342.5-201ENST00000571340 2142 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AP000542.2-201ENST00000623199 6179 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 C2CD6-204ENST00000450242 2571 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 EOGT-210ENST00000615922 1931 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 IKZF3-202ENST00000346243 1296 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA1P55317 RNU1-20P-201ENST00000363314 162 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC4.51□□□□□ -1.69
FOXA1P55317 CHMP1B2P-201ENST00000399581 597 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 RN7SKP199-201ENST00000410325 305 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 GTF3AP1-201ENST00000416942 1004 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 LYPLA1P1-201ENST00000434514 622 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AC097523.2-201ENST00000435551 652 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 IKZF3-212ENST00000439016 1246 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA1P55317 MYO5BP2-201ENST00000449815 1277 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 LINC01206-203ENST00000476815 482 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA1P55317 RN7SL817P-201ENST00000480777 288 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 RPSAP50-201ENST00000481955 852 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 SSBP1-211ENST00000484178 676 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
FOXA1P55317 DUBR-205ENST00000495228 411 ntTSL 2 BASIC4.51□□□□□ -1.69
FOXA1P55317 SCARNA22-201ENST00000503991 125 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AK4P6-201ENST00000505168 528 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AC093763.2-201ENST00000505334 1223 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA1P55317 AC002428.2-201ENST00000522973 414 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA1P55317 AC114550.3-201ENST00000524073 579 ntTSL 4 BASIC4.51□□□□□ -1.69
FOXA1P55317 AC104257.1-202ENST00000524275 884 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA1P55317 AC009509.1-201ENST00000536317 1110 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA1P55317 MFAP5-211ENST00000540087 492 ntTSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 LINC01619-209ENST00000552277 571 ntTSL 4 BASIC4.51□□□□□ -1.69
FOXA1P55317 AL390726.5-202ENST00000564800 256 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 ATP5J2P6-201ENST00000565203 266 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC4.51□□□□□ -1.69
FOXA1P55317 AC087763.1-201ENST00000603391 286 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 MIR6826-201ENST00000617808 98 ntBASIC4.51□□□□□ -1.69
FOXA1P55317 AC048338.2-201ENST00000623601 684 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA1P55317 AC087632.1-216ENST00000625619 487 ntAPPRIS P1 TSL 3 BASIC4.51□□□□□ -1.69
FOXA1P55317 CLEC12A-203ENST00000355690 1428 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 AC024337.2-201ENST00000616608 2797 ntTSL 5 BASIC4.51□□□□□ -1.69
FOXA1P55317 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC4.51□□□□□ -1.69
FOXA1P55317 MLH3-212ENST00000556740 4491 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA1P55317 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.5□□□□□ -1.69
FOXA1P55317 PCAT14-202ENST00000627127 3935 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 ZNF562-201ENST00000293648 12380 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA1P55317 SLC13A1-201ENST00000194130 3815 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA1P55317 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA1P55317 RNA5SP305-201ENST00000362665 119 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA1P55317 AL589647.1-201ENST00000402485 466 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 RSU1P3-201ENST00000412878 835 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AL591848.1-201ENST00000413092 322 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AC004074.1-201ENST00000421810 1063 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 BX510359.3-201ENST00000422168 306 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 HSPE1P16-201ENST00000426640 348 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AL355357.1-201ENST00000433531 417 ntTSL 2 BASIC4.5□□□□□ -1.69
FOXA1P55317 OR52J1P-201ENST00000450596 932 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC4.5□□□□□ -1.69
FOXA1P55317 RPS5P7-201ENST00000456664 608 ntBASIC4.5□□□□□ -1.69
FOXA1P55317 AC110749.1-201ENST00000462007 357 ntBASIC4.5□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms