Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC006133.1-201ENST00000617106 264 ntBASIC6.71□□□□□ -1.33
MSH6P52701 AC067931.1-201ENST00000624190 671 ntBASIC6.71□□□□□ -1.33
MSH6P52701 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC6.71□□□□□ -1.33
MSH6P52701 SLC26A5-208ENST00000393730 2498 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 LINC01619-207ENST00000551843 2205 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 HSD17B11-201ENST00000358290 1885 ntAPPRIS P1 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 AC002525.1-201ENST00000624392 1622 ntBASIC6.71□□□□□ -1.34
MSH6P52701 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.71□□□□□ -1.34
MSH6P52701 GTF2IRD2P1-202ENST00000618962 3055 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
MSH6P52701 ZNF518B-201ENST00000326756 6894 ntAPPRIS P1 TSL 3 BASIC6.7□□□□□ -1.34
MSH6P52701 AC092650.1-201ENST00000447571 1808 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSH6P52701 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC6.7□□□□□ -1.34
MSH6P52701 ASXL2-203ENST00000435504 12878 ntAPPRIS P5 TSL 5 BASIC6.7□□□□□ -1.34
MSH6P52701 RNU6ATAC5P-201ENST00000388104 126 ntBASIC6.7□□□□□ -1.34
MSH6P52701 AL136084.2-202ENST00000433997 353 ntTSL 2 BASIC6.7□□□□□ -1.34
MSH6P52701 OR4C10P-201ENST00000434991 931 ntBASIC6.7□□□□□ -1.34
MSH6P52701 PHBP16-201ENST00000446318 950 ntBASIC6.7□□□□□ -1.34
MSH6P52701 AL645608.2-201ENST00000458555 471 ntTSL 2 BASIC6.7□□□□□ -1.34
MSH6P52701 RNU6ATAC28P-201ENST00000459249 118 ntBASIC6.7□□□□□ -1.34
MSH6P52701 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC6.7□□□□□ -1.34
MSH6P52701 OR8G5-201ENST00000524943 1041 ntBASIC6.7□□□□□ -1.34
MSH6P52701 UBA2-208ENST00000592791 910 ntTSL 2 BASIC6.7□□□□□ -1.34
MSH6P52701 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC6.7□□□□□ -1.34
MSH6P52701 LINC01541-202ENST00000568095 3105 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSH6P52701 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC6.7□□□□□ -1.34
MSH6P52701 ABCC13-202ENST00000463099 3842 ntBASIC6.7□□□□□ -1.34
MSH6P52701 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.7□□□□□ -1.34
MSH6P52701 AC092451.3-201ENST00000625067 1343 ntBASIC6.7□□□□□ -1.34
MSH6P52701 SRRM1-202ENST00000374389 3110 ntAPPRIS ALT2 TSL 5 BASIC6.7□□□□□ -1.34
MSH6P52701 APBB2-230ENST00000543538 6992 ntTSL 5 BASIC6.7□□□□□ -1.34
MSH6P52701 PIGK-203ENST00000445065 4318 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSH6P52701 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSH6P52701 DYRK1A-202ENST00000339659 8654 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSH6P52701 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC6.7□□□□□ -1.34
MSH6P52701 SNORA48.4-201ENST00000391089 134 ntBASIC6.69□□□□□ -1.34
MSH6P52701 LRRC37BP1-201ENST00000398851 714 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AMZ2P2-201ENST00000406819 1057 ntBASIC6.69□□□□□ -1.34
MSH6P52701 BX842559.2-201ENST00000451418 605 ntBASIC6.69□□□□□ -1.34
MSH6P52701 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC6.69□□□□□ -1.34
MSH6P52701 AC005412.2-201ENST00000492004 341 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AC091868.1-201ENST00000508746 304 ntBASIC6.69□□□□□ -1.34
MSH6P52701 RNU1-6P-201ENST00000516290 144 ntBASIC6.69□□□□□ -1.34
MSH6P52701 SNORA31.9-201ENST00000516429 84 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AC090193.1-201ENST00000518633 543 ntTSL 4 BASIC6.69□□□□□ -1.34
MSH6P52701 AP003557.1-202ENST00000528978 562 ntTSL 4 BASIC6.69□□□□□ -1.34
MSH6P52701 SPTY2D1-AS1-203ENST00000542172 331 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 AC092902.2-202ENST00000599350 686 ntTSL 3 BASIC6.69□□□□□ -1.34
MSH6P52701 AL049794.2-201ENST00000616301 365 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AL022401.1-201ENST00000619498 108 ntBASIC6.69□□□□□ -1.34
MSH6P52701 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 HECW2-201ENST00000260983 11809 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 ENKUR-205ENST00000615958 3294 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC6.69□□□□□ -1.34
MSH6P52701 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 PSMC6-218ENST00000606149 1560 ntAPPRIS ALT1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 VCAN-203ENST00000343200 9455 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 RGS5-212ENST00000618415 5812 ntTSL 4 BASIC6.69□□□□□ -1.34
MSH6P52701 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 RNF133-201ENST00000340112 1445 ntAPPRIS P1 BASIC6.69□□□□□ -1.34
MSH6P52701 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 RNU1-13P-201ENST00000384499 162 ntBASIC6.69□□□□□ -1.34
MSH6P52701 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.34
MSH6P52701 HNRNPA1P29-201ENST00000426409 879 ntBASIC6.69□□□□□ -1.34
MSH6P52701 RPL7AP49-201ENST00000429522 581 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AL591438.1-201ENST00000433508 581 ntBASIC6.69□□□□□ -1.34
MSH6P52701 OR2A3P-201ENST00000493774 953 ntBASIC6.69□□□□□ -1.34
MSH6P52701 SNORA67.7-201ENST00000516664 135 ntBASIC6.69□□□□□ -1.34
MSH6P52701 MTCO1P49-201ENST00000523429 802 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AL049839.1-201ENST00000556151 657 ntBASIC6.69□□□□□ -1.34
MSH6P52701 NPM1P5-201ENST00000557228 838 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.69□□□□□ -1.34
MSH6P52701 RN7SL290P-201ENST00000578661 300 ntBASIC6.69□□□□□ -1.34
MSH6P52701 MIR5699-201ENST00000578903 90 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AC022916.3-201ENST00000592961 742 ntBASIC6.69□□□□□ -1.34
MSH6P52701 RNA5SP439-201ENST00000617595 124 ntBASIC6.69□□□□□ -1.34
MSH6P52701 AP000843.1-201ENST00000624880 701 ntBASIC6.69□□□□□ -1.34
MSH6P52701 RNA5SP196-201ENST00000625967 102 ntBASIC6.69□□□□□ -1.34
MSH6P52701 RUVBL2-213ENST00000639391 120 ntTSL 5 BASIC6.69□□□□□ -1.34
MSH6P52701 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC6.68□□□□□ -1.34
MSH6P52701 TMPRSS11F-201ENST00000356291 2088 ntAPPRIS P1 TSL 2 BASIC6.68□□□□□ -1.34
MSH6P52701 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.68□□□□□ -1.34
MSH6P52701 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 AC109446.4-201ENST00000623235 2755 ntBASIC6.68□□□□□ -1.34
MSH6P52701 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
MSH6P52701 PIAS2-204ENST00000585916 11075 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSH6P52701 ERVFRD-3-201ENST00000578561 1617 ntBASIC6.68□□□□□ -1.34
MSH6P52701 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 LIMA1-212ENST00000552491 2652 ntAPPRIS ALT2 TSL 2 BASIC6.68□□□□□ -1.34
MSH6P52701 IL1RL1-201ENST00000233954 2058 ntAPPRIS P1 TSL 1 (best) BASIC6.68□□□□□ -1.34
MSH6P52701 DNM1P47-202ENST00000561463 15043 ntTSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 AL356056.1-206ENST00000424615 407 ntTSL 5 BASIC6.68□□□□□ -1.34
MSH6P52701 COX6CP13-201ENST00000428703 226 ntBASIC6.68□□□□□ -1.34
MSH6P52701 AC004980.3-201ENST00000447046 365 ntBASIC6.68□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 94.7 ms