Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 OR8D1-201ENST00000357821 1026 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
BRCA1P38398 MIR372-201ENST00000362225 67 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 RNU11-201ENST00000387069 134 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 AC016772.1-201ENST00000444170 1261 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 AC009495.2-201ENST00000457108 506 ntTSL 2 BASIC5.73□□□□□ -1.49
BRCA1P38398 RN7SL132P-201ENST00000478131 296 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 RN7SL810P-201ENST00000493031 276 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 MIR2116-201ENST00000517221 80 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
BRCA1P38398 AC027369.5-201ENST00000533838 755 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 AC009803.3-201ENST00000548457 540 ntTSL 3 BASIC5.73□□□□□ -1.49
BRCA1P38398 AL049875.1-202ENST00000556620 857 ntTSL 3 BASIC5.73□□□□□ -1.49
BRCA1P38398 AL360012.1-201ENST00000602813 131 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 AC012442.3-202ENST00000636742 206 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 SBNO1-201ENST00000267176 11121 ntAPPRIS P3 TSL 5 BASIC5.73□□□□□ -1.49
BRCA1P38398 MYO5A-209ENST00000553916 5989 ntTSL 5 BASIC5.73□□□□□ -1.49
BRCA1P38398 AC015813.1-202ENST00000577267 4056 ntTSL 2 BASIC5.73□□□□□ -1.49
BRCA1P38398 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC5.73□□□□□ -1.49
BRCA1P38398 AL354696.2-201ENST00000619407 1910 ntTSL 2 BASIC5.73□□□□□ -1.49
BRCA1P38398 FILIP1-201ENST00000237172 4580 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
BRCA1P38398 NAV1-201ENST00000367295 11645 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
BRCA1P38398 NBPF20-203ENST00000594479 3670 ntTSL 5 BASIC5.73□□□□□ -1.49
BRCA1P38398 NBPF14-210ENST00000621066 3670 ntTSL 5 BASIC5.73□□□□□ -1.49
BRCA1P38398 AC025031.4-201ENST00000621248 3271 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 RNA5SP283-201ENST00000365604 119 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 MIR554-201ENST00000384874 96 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 RPS27AP11-201ENST00000402798 447 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 AC099670.2-201ENST00000435130 321 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 RN7SL691P-201ENST00000494487 301 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC5.73□□□□□ -1.49
BRCA1P38398 AC021193.1-201ENST00000511607 420 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 NPM1P41-201ENST00000512920 831 ntBASIC5.73□□□□□ -1.49
BRCA1P38398 AC079089.1-204ENST00000530194 572 ntTSL 2 BASIC5.73□□□□□ -1.49
BRCA1P38398 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.73□□□□□ -1.49
BRCA1P38398 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.72□□□□□ -1.49
BRCA1P38398 USP46-201ENST00000441222 7954 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 DNAH3-201ENST00000261383 12394 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 SLC6A14-202ENST00000598581 4520 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
BRCA1P38398 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 ITGA1-201ENST00000282588 10757 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
BRCA1P38398 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
BRCA1P38398 AC021146.4-201ENST00000309229 279 ntBASIC5.72□□□□□ -1.49
BRCA1P38398 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 DYDC1-203ENST00000421924 708 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 AL449043.1-202ENST00000427318 582 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 NDUFA5P1-201ENST00000433858 341 ntBASIC5.72□□□□□ -1.49
BRCA1P38398 LIX1L-AS1-205ENST00000437797 536 ntTSL 3 BASIC5.72□□□□□ -1.49
BRCA1P38398 TRAPPC2-208ENST00000519885 561 ntTSL 3 BASIC5.72□□□□□ -1.49
BRCA1P38398 AP003306.1-201ENST00000529875 353 ntTSL 2 BASIC5.72□□□□□ -1.49
BRCA1P38398 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
BRCA1P38398 AC009554.1-201ENST00000559251 399 ntTSL 5 BASIC5.72□□□□□ -1.49
BRCA1P38398 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC5.72□□□□□ -1.49
BRCA1P38398 AC007786.3-201ENST00000615154 596 ntBASIC5.72□□□□□ -1.49
BRCA1P38398 LGI1-209ENST00000627699 664 ntTSL 3 BASIC5.72□□□□□ -1.49
BRCA1P38398 LIMA1-215ENST00000552823 3254 ntAPPRIS ALT2 TSL 2 BASIC5.72□□□□□ -1.49
BRCA1P38398 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
BRCA1P38398 CACNA1D-224ENST00000637424 6856 ntAPPRIS ALT2 TSL 5 BASIC5.72□□□□□ -1.49
BRCA1P38398 NEGR1-202ENST00000357731 12811 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.72□□□□□ -1.49
BRCA1P38398 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
BRCA1P38398 C21orf91-201ENST00000284881 5433 ntAPPRIS P4 TSL 2 BASIC5.72□□□□□ -1.49
BRCA1P38398 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
BRCA1P38398 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC5.71□□□□□ -1.49
BRCA1P38398 PCLO-203ENST00000423517 17147 ntTSL 5 BASIC5.71□□□□□ -1.49
BRCA1P38398 PDE4D-205ENST00000360047 3122 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
BRCA1P38398 SNORA11.2-201ENST00000408318 127 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 AC023271.1-201ENST00000445936 1090 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 HNRNPRP2-201ENST00000528421 743 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 HNRNPCP4-201ENST00000571636 900 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 AC090403.1-202ENST00000582108 833 ntTSL 3 BASIC5.71□□□□□ -1.5
BRCA1P38398 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.71□□□□□ -1.5
BRCA1P38398 MIR6867-201ENST00000610636 67 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 AC000095.2-202ENST00000637415 154 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 LINC00240-204ENST00000607607 5607 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC5.71□□□□□ -1.5
BRCA1P38398 ZNF81-204ENST00000376954 7933 ntAPPRIS P1 TSL 5 BASIC5.71□□□□□ -1.5
BRCA1P38398 MDM4-216ENST00000616250 9597 ntTSL 5 BASIC5.71□□□□□ -1.5
BRCA1P38398 PCDH18-203ENST00000507846 4625 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 AL592182.3-201ENST00000642132 3304 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
BRCA1P38398 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.71□□□□□ -1.5
BRCA1P38398 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.71□□□□□ -1.5
BRCA1P38398 CLUL1-213ENST00000620089 1947 ntTSL 5 BASIC5.71□□□□□ -1.5
BRCA1P38398 ALPK2-201ENST00000361673 7303 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 PHC3-214ENST00000494943 5030 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 ICE2P1-201ENST00000512800 1849 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 CARD16-201ENST00000375704 613 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 LST1-207ENST00000376092 285 ntTSL 1 (best) BASIC5.71□□□□□ -1.5
BRCA1P38398 AL583835.1-201ENST00000399570 407 ntBASIC5.71□□□□□ -1.5
BRCA1P38398 RPS21P8-201ENST00000413365 247 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 124.4 ms